PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN04268.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LBD

Protein Properties

Length: 335aa MW: 37425.9 Da PI: 7.164

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN04268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.6	3.7e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk lrrkC+++Cv+apyfp ++p+kf nvhk+FGasn++kllk+l+ ++reda++sl++eAe r+rdPvyG+vgvi+ lq++l+q++++l+++k+ PIN04268.1 7 PCAACKCLRRKCTQECVFAPYFPPDNPQKFTNVHKVFGASNISKLLKELNANQREDAVNSLAFEAEYRLRDPVYGCVGVISCLQHRLKQVQHDLETAKK 105 7**********************************************************************************************9998 PP DUF260 100 e 100 e PIN04268.1 106 E 106 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MSSSNSPCAA CKCLRRKCTQ ECVFAPYFPP DNPQKFTNVH KVFGASNISK LLKELNANQR 60 EDAVNSLAFE AEYRLRDPVY GCVGVISCLQ HRLKQVQHDL ETAKKELATY VGPSAMLPIL 120 NHPGFMQQHS NYGPSAYQVV PYNMQPMMGL PTGVPHGAQL MIRDPQQQQQ QQQQYLEAQH 180 LAAVAAAAAR EQEILRTYEQ QQQQQQNDLV RFNGGFDDAG GPVTATGFNE MPAVVAAAMQ 240 PSLALGNSYD QTLPYHPIQQ HANMQEHPHT QSHTHSHHPH QLQLQQQELL LQQQSVTPHH 300 QQQTQQQLAQ PQASHSQQQT PRPKSEDGRS IGPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-77	LBD family protein