PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN04036.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 529aa MW: 58155.8 Da PI: 8.6862

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN04036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PIN04036.1 86 FVCEICNKGFQRDQNLQLHRRGH 108 89*******************88 PP
2	zf-C2H2	12	0.00063	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ PIN04036.1 162 WKCDKCSKKYAVQSDWKAHSKTC 184 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MMKNSLEILQ NPPMEENMSN LTSASNEASV SSSNKNDNGV IYPPQYNFPP MNTPQDPPPP 60 IKKKRNQPGH PGEFTKTGKK STSILFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTSK 120 EIRKKVYVCP EISCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH 180 SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARS ITGNNNNDNN NNNNNLLQVN 240 QLQNQFINAN ELPFQIKKEQ QNFTLRPEIP PWLACTPTIG PGPGPPTIDL TAPSSIFQDF 300 QQNHHHHHHP NPNPNSGPTT LQHPYHPPPS PHISATALLQ KAAQMGAKSS TPSPAGMFIR 360 PHQAVAHVSA GSSDCGTTGF GLNLSSRDEF IKGLASYGNK AATVTGGSTE TGGASSAGGT 420 INPPPSSSLF HQMMMNNPGF DQASSFDDMG FGDQESLDNF HATLDQFSRK NAGKNENGGG 480 NCNHNEGMTR DFLGLRPLSQ SEIAGLSNCM NNNGANEVQN HTVQKSWQG

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MMKNSLEILQ NPPMEENMSN LTSASNEASV SSSNKNDNGV IYPPQYNFPP MNTPQDPPPP  60
IKKKRNQPGH PGEFTKTGKK STSILFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTSK  120
EIRKKVYVCP EISCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARS ITGNNNNDNN NNNNNLLQVN  240
QLQNQFINAN ELPFQIKKEQ QNFTLRPEIP PWLACTPTIG PGPGPPTIDL TAPSSIFQDF  300
QQNHHHHHHP NPNPNSGPTT LQHPYHPPPS PHISATALLQ KAAQMGAKSS TPSPAGMFIR  360
PHQAVAHVSA GSSDCGTTGF GLNLSSRDEF IKGLASYGNK AATVTGGSTE TGGASSAGGT  420
INPPPSSSLF HQMMMNNPGF DQASSFDDMG FGDQESLDNF HATLDQFSRK NAGKNENGGG  480
NCNHNEGMTR DFLGLRPLSQ SEIAGLSNCM NNNGANEVQN HTVQKSWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	125	KLKQRTSKEIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-85	C2H2 family protein