PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN03516.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 334aa MW: 37093.8 Da PI: 7.1528

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN03516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.1	7.7e-15	245	270	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt lC+ ++++GtC+yGd+C+FaHg PIN03516.1 245 FKTDLCNKWQQSGTCPYGDNCQFAHG 270 69***********************8 PP
2	zf-CCCH	18.7	3.2e-06	283	307	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr + + C+yG rC+F H PIN03516.1 283 YKTEVCRMVLNGIPCPYGHRCHFRH 307 9********99********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MEREISFSGH EDPTVSAAVP PFIGEYDFAT SLYPSIISPK HSPLSDYLND GPPIWRSDDA 60 LKSCLPQIQQ QQLHQDLMDR HRRVLSHLRD LAKQAQALHQ ENVNLKMANL DLNNRLNLLI 120 NGAPFLGVDL VPGLDSVVDG LQKLGFGAED EGTSENEAVA KSPTSVMDPG RVRGGLERVH 180 LPKSISVRST GYLKASRAGG SSGKGGDCVK ASNQNRIDNG TQKVYVKGGK KDEPVELEVY 240 NQGMFKTDLC NKWQQSGTCP YGDNCQFAHG IEELRPVLRH PRYKTEVCRM VLNGIPCPYG 300 HRCHFRHTLT DEEQLKRAMH SNTFDSLNYQ SVTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	8e-55	C3H family protein