PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN03397.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family LBD
Protein Properties Length: 239aa    MW: 27464.8 Da    PI: 6.5047
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN03397.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.74e-38101101100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 aCaaCk++rr+C+++C+lapyfpa++pk f+nvh+lFG+sn++k+l++l+ +e +++am+s++yeA++r r Pv+G+++vi+ l+ q +++ +el++++
  PIN03397.1  10 ACAACKYQRRRCTPNCPLAPYFPANNPKMFQNVHRLFGVSNITKTLNSLKSNEeQDEAMKSIIYEADMRDRFPVHGCCAVIQLLRLQFQHAVKELQYVR 108
                 7************************************************655549****************************************9998 PP

      DUF260  99 ee 100
                 ++
  PIN03397.1 109 AH 110
                 76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MTIKGGTTPA CAACKYQRRR CTPNCPLAPY FPANNPKMFQ NVHRLFGVSN ITKTLNSLKS  60
NEEQDEAMKS IIYEADMRDR FPVHGCCAVI QLLRLQFQHA VKELQYVRAH LAACREQQQL  120
NSNNNNNTNN NNNEINYENG MNYGVNPFLS NENVSVFVDN LLSENMNLAS IQAQMEALGM  180
KEQEETTNLF PSDLERMQFS TRNIDDRQPY IDQTRETFES RYGLLLPTNE STSSRNRYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-42LBD family protein