PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN02936.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 490aa    MW: 54398.6 Da    PI: 6.2651
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN02936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.11.6e-1101284832374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   lLlecA avs ++l +aq++L +l ++asp+g +  +R++ayf++A+++r+++s+ ++++ l          ++  aa+++f++vsP++kf+h+t N
  PIN02936.1 128 LALLLECAVAVSVDNLGEAQRMLLELTQMASPYGvSCAERVVAYFAKAMSSRVMNSWLGVCSPLVKF-------KDIHAAFQVFNNVSPFIKFAHFTSN 219
                 579*******************************9999********************999866544.......4567899****************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea++ +++vHiiD+di+qGlQWpaL++ La+R+egpp++R+Tg+gs    + + l+etg+ L++fA++lg+ fef ++  k  + ++++eL+++ 
  PIN02936.1 220 QAILEAFHDHDKVHIIDLDIMQGLQWPALFHILATRAEGPPHVRLTGLGS----NMTVLSETGKHLSNFARRLGMMFEFYPVDKKCGDIVDVSELQIRG 314
                 **************************************************....9**************************888889999********* PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 gE+laV++    h+l+d +++  +    +++++++l+Pk++++veqe+ h ++sFl+rf+++l+yys+lfdsl a lp e+  r+ vE+ ll+rei nv
  PIN02936.1 315 GETLAVHWLQ--HSLYDATGPDWK----TMRVLQGLNPKLITLVEQEIAH-GGSFLDRFVSSLHYYSTLFDSLGAFLPGEDPGRHQVEHCLLHREINNV 406
                 *********9..999999999888....**********************.789********************************************* PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +a  g +r  +  ++++Wr+ l++ GF ++p+s++ ++qa+l+l++++  +gy++ + +g+l lgWk+  L+++SaW+
  PIN02936.1 407 LAVGGPARSGED-KFKHWRSELSRNGFLQIPMSTNSMAQAQLMLNMFPpANGYSLVQGDGTLRLGWKETGLYTASAWT 483
                 *******77665.5***************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    
MQPQEQLNYS DNGFSGATTS AKNLDKNELS QWVEHVTKQL IEDLPGNENE NLSTQNFPVA  60
YEEGGSSLAA LLAESRPRKV SRRSSNENPG SIFLNQNQQC DDGTNFDGAK IIMKSKSSSS  120
DEQGLNLLAL LLECAVAVSV DNLGEAQRML LELTQMASPY GVSCAERVVA YFAKAMSSRV  180
MNSWLGVCSP LVKFKDIHAA FQVFNNVSPF IKFAHFTSNQ AILEAFHDHD KVHIIDLDIM  240
QGLQWPALFH ILATRAEGPP HVRLTGLGSN MTVLSETGKH LSNFARRLGM MFEFYPVDKK  300
CGDIVDVSEL QIRGGETLAV HWLQHSLYDA TGPDWKTMRV LQGLNPKLIT LVEQEIAHGG  360
SFLDRFVSSL HYYSTLFDSL GAFLPGEDPG RHQVEHCLLH REINNVLAVG GPARSGEDKF  420
KHWRSELSRN GFLQIPMSTN SMAQAQLMLN MFPPANGYSL VQGDGTLRLG WKETGLYTAS  480
AWTSVNYPFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-143GRAS family protein