PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN02116.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

ARF

Protein Properties

Length: 1098aa MW: 120863 Da PI: 6.6775

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN02116.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.3	5.8e-23	132	233	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l PIN02116.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLVAGDSVLFI--RDERQQL 226 99***************************96555444..8********************************************..4577788 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PIN02116.1 227 LLGIRRA 233 *9997 PP
2	Auxin_resp	118.5	5.5e-39	258	341	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekveka.lkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka +++++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ PIN02116.1 258 AAHAAASNSPFTVFYNPRASPSEFVIPLAKYYKAaCSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 341 79*************************98776167*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1098 aa Download sequence
MKTPTSVAGA PTANASAAEG EKKSINGELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA 60 SMKKDVDAQI PNYPNLPSKL LCHLHSVTLH ADPESDEVYA QMTLQPVPSF DKDALLRSDL 120 SMKANKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ ELVARDLHDN 180 VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL VAGDSVLFIR DERQQLLLGI RRANRQPPKL 240 SSSVLSSDSM HIGILAAAAH AAASNSPFTV FYNPRASPSE FVIPLAKYYK AACSNQISLG 300 MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG ERRNRVSIWE 360 IEPVTAPFFI CPTPPFFRSK RPRQPGMPDD DSSDLDSLFR RTMPWLGDEF GLKDPQALPG 420 FSLVQWMNMQ QNPSMQPNYM NPLPSSLLQN LVGGDISRQL GLPGTQISQH NNLQFNAQRP 480 TQPVPQLDQL QKPLGSIIQP QQQLPDIAQP ARQNLVGQNL PASQVQSQML PSQNSIQAQN 540 LLQQQQSLLN HQLQRNLPQN LAQPQPQPQQ QQQQILTQQQ NLMPSQAHDH VSQQLQIPDN 600 QSQFQLLQKL HQQQQSLLAQ QSGMQQPSQM TQLQDQQKQL LDIPPHFSRS VATSQMMDAS 660 HGTTSGMHPQ SHVTAGQQMP SNNSQTNLRF AEPPQQPKLQ QQQSGLLSEL PGHVGSALNP 720 INNQLPPGSG SILTAAAGGG QSVVTDDVPS CSTSPSTNNC PNGVQSIMNS RNHRTTTMGD 780 ELLNSTGPEP MSSTGNLVKD FQQKSDVKPS LNVSKSQNQG FFASQTYLNA AGTHIDYLDS 840 SSSATSVISQ NDGQIAPNNS MSFNSQPLLF RDASQDGDVH GDLRNNVPFG ANVNNQLAMP 900 MMADTLITKN IAGSSKDFST NLSSGGGMLS TYENPKEAQQ ELSSSMVSQS FGVPDMAFNS 960 IDSAINDGSF MNRGAWAAPP QIPRMRTYTK VYKRGAVGRS IDITRYSGYD ELKQDLARRF 1020 GIEGQLEDRQ RIGWKLVYVD HENDVLLVGD DPWEEFVNCV RCIKILSPQE VQQMSLDGDF 1080 GDGVLPNQAC SSSDNGVN

Sequence ? help Back to Top

Protein Sequence Length: 1098 aa Download sequence

MKTPTSVAGA PTANASAAEG EKKSINGELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA  60
SMKKDVDAQI PNYPNLPSKL LCHLHSVTLH ADPESDEVYA QMTLQPVPSF DKDALLRSDL  120
SMKANKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ ELVARDLHDN  180
VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL VAGDSVLFIR DERQQLLLGI RRANRQPPKL  240
SSSVLSSDSM HIGILAAAAH AAASNSPFTV FYNPRASPSE FVIPLAKYYK AACSNQISLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG ERRNRVSIWE  360
IEPVTAPFFI CPTPPFFRSK RPRQPGMPDD DSSDLDSLFR RTMPWLGDEF GLKDPQALPG  420
FSLVQWMNMQ QNPSMQPNYM NPLPSSLLQN LVGGDISRQL GLPGTQISQH NNLQFNAQRP  480
TQPVPQLDQL QKPLGSIIQP QQQLPDIAQP ARQNLVGQNL PASQVQSQML PSQNSIQAQN  540
LLQQQQSLLN HQLQRNLPQN LAQPQPQPQQ QQQQILTQQQ NLMPSQAHDH VSQQLQIPDN  600
QSQFQLLQKL HQQQQSLLAQ QSGMQQPSQM TQLQDQQKQL LDIPPHFSRS VATSQMMDAS  660
HGTTSGMHPQ SHVTAGQQMP SNNSQTNLRF AEPPQQPKLQ QQQSGLLSEL PGHVGSALNP  720
INNQLPPGSG SILTAAAGGG QSVVTDDVPS CSTSPSTNNC PNGVQSIMNS RNHRTTTMGD  780
ELLNSTGPEP MSSTGNLVKD FQQKSDVKPS LNVSKSQNQG FFASQTYLNA AGTHIDYLDS  840
SSSATSVISQ NDGQIAPNNS MSFNSQPLLF RDASQDGDVH GDLRNNVPFG ANVNNQLAMP  900
MMADTLITKN IAGSSKDFST NLSSGGGMLS TYENPKEAQQ ELSSSMVSQS FGVPDMAFNS  960
IDSAINDGSF MNRGAWAAPP QIPRMRTYTK VYKRGAVGRS IDITRYSGYD ELKQDLARRF  1020
GIEGQLEDRQ RIGWKLVYVD HENDVLLVGD DPWEEFVNCV RCIKILSPQE VQQMSLDGDF  1080
GDGVLPNQAC SSSDNGVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein