PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN01929.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

ARF

Protein Properties

Length: 661aa MW: 74178.6 Da PI: 6.5516

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN01929.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.7	2.5e-24	131	232	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++el+v PIN01929.1 131 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQQTPTQELIAKDLHGIEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENGELRV 227 99**************************9555555679********************************************..449999* PP EEE-S CS B3 95 kvfrk 99 +v+r+ PIN01929.1 228 GVRRH 232 ***97 PP
2	Auxin_resp	96.7	3.3e-32	257	335	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha+ t++ F v+Y+Pr+ s+F++ ++++++a+++ + vGmRfkm+fe+eds+err+sGt+vgv+d++p W++SkWr L PIN01929.1 257 ASHAVLTQTLFVVYYKPRT--SQFIIGLNNYLEAINHDFGVGMRFKMRFEGEDSPERRFSGTIVGVEDISP-YWEHSKWRTL 335 68999***********6..9********************************************9.9*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MANRGSYSQQ QHSGFSAEGS GAKDAFYEEL WRACAGPVVD VPKVGERVYY FPQGHMEQLE 60 ASTNQELNQR IPMFNLPSKI LCRVFNIHLL AEQETDEVYA QITLMPEADQ TELRSPDDPL 120 DEPPRPAVHS FCKVLTASDT STHGGFSVLR KHATECLPPL DMNQQTPTQE LIAKDLHGIE 180 WHFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDSFVFLRG ENGELRVGVR RHARQQSSMP 240 TSVISSQSMH LGVLATASHA VLTQTLFVVY YKPRTSQFII GLNNYLEAIN HDFGVGMRFK 300 MRFEGEDSPE RRFSGTIVGV EDISPYWEHS KWRTLRVQWD EPASIPRPDR VSPWEIEPFV 360 LSPTPPLAQP TTVKHKRPRP HVETPFTETM TSPAWNLAHD SHQMKRGTTF AKQCGNNTLS 420 SHIDGGWQSL PRVNASPNMI AEETEESKSA STWSVISNHS ALSSGKPGNE GRKSDIVASC 480 RLFGIDLKSP SAVTLCEISS LKLVDTPNDA GEVYVPSTLS SGDSEQKSSI SKEFRDLKQD 540 QFQVPAKEVQ SRQNNSSRSR TKVQMQGVAV GRAVDLTTLR GYGDLITELE EMFEIKGELR 600 PRNKWEIVFT DDEGDMMLVG DDPWPEFCNM VRRIFICSSQ DVKKMKGSKM PLPVAECEGT 660 D

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MANRGSYSQQ QHSGFSAEGS GAKDAFYEEL WRACAGPVVD VPKVGERVYY FPQGHMEQLE  60
ASTNQELNQR IPMFNLPSKI LCRVFNIHLL AEQETDEVYA QITLMPEADQ TELRSPDDPL  120
DEPPRPAVHS FCKVLTASDT STHGGFSVLR KHATECLPPL DMNQQTPTQE LIAKDLHGIE  180
WHFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDSFVFLRG ENGELRVGVR RHARQQSSMP  240
TSVISSQSMH LGVLATASHA VLTQTLFVVY YKPRTSQFII GLNNYLEAIN HDFGVGMRFK  300
MRFEGEDSPE RRFSGTIVGV EDISPYWEHS KWRTLRVQWD EPASIPRPDR VSPWEIEPFV  360
LSPTPPLAQP TTVKHKRPRP HVETPFTETM TSPAWNLAHD SHQMKRGTTF AKQCGNNTLS  420
SHIDGGWQSL PRVNASPNMI AEETEESKSA STWSVISNHS ALSSGKPGNE GRKSDIVASC  480
RLFGIDLKSP SAVTLCEISS LKLVDTPNDA GEVYVPSTLS SGDSEQKSSI SKEFRDLKQD  540
QFQVPAKEVQ SRQNNSSRSR TKVQMQGVAV GRAVDLTTLR GYGDLITELE EMFEIKGELR  600
PRNKWEIVFT DDEGDMMLVG DDPWPEFCNM VRRIFICSSQ DVKKMKGSKM PLPVAECEGT  660
D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	380	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein