PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN01335.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 711aa    MW: 80439.2 Da    PI: 6.5186
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN01335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.82e-1173377081374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ cA+av+s+d + a+++L++++e++sp+gd mqRla+yf+++L+arla+s++e+yk+l  ++ts    +++l+a+++++ ++P+ k+s++ aN
  PIN01335.1 337 LRTLLTLCAQAVASDDRRTANEFLKQVREHSSPTGDGMQRLAHYFANGLEARLAGSGTEIYKSLINKPTS---AADVLKAYHIYVATCPFRKISNFFAN 432
                 5789************************************************************999999...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I++  ++ +r+HiiDf+i +G+QWp++lq L+sRp+gpp+lR+Tg++ p +g    e++eetg+rLa +Ae ++vpfefn+ +a+++e+++le+L++
  PIN01335.1 433 KTIMNVSQKVTRLHIIDFGILYGFQWPCFLQRLSSRPGGPPKLRVTGIDLPCPGfrPLERVEETGRRLACYAEVFKVPFEFNA-IAQKWETIKLEDLKI 530
                 ***************************************************999999**************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E l+Vn+ +   +llde+v ++s+r+ vL+lv++++P v+v+   +  +n++ F +rf ea+ +ys++fd+lea++pre +er+ +E+ ++g+e++
  PIN01335.1 531 DKDELLVVNCLYVFRYLLDETVVVNSPRNIVLNLVRKMNPAVFVLGIVNGAYNAPFFITRFREAMFHYSSFFDMLEANIPREIHERMLLEKIVFGQEAM 629
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nv+ace aer+er e +++W+ r ++aGF+++pl++++++ ak  +++ + + + ++ + g+l++gWk+r ++++S+Wr
  PIN01335.1 630 NVIACEAAERIERPEPYKQWQVRNMRAGFEQLPLDKEIMQMAKNRVETSYHKDFVIDADGGWLLQGWKGRIVYALSSWR 708
                 **************************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    
MVMDQNFSGY VGPMAGFKFN NPMCLNPNLI HNLGVGDQFI NADKTDNRPV SSQFTSSEDD  60
SVEDFDFSDA VLKYINHILM EEDVEDKTCM FQESAALQAA EKSFYEVLGE PKLDQSFESP  120
DEKFGEPKSF CGLGDMETLC PEWRTYPYGH HVIDNVVSPA TSHSSCSSSS SNGTKIDGLK  180
DSPVRRFSIL DVSSDQGSAM QFKKEVEETR KFLPSHSNLI VETKYDNLFN VEKKFDDEGF  240
LDLSRGKKNP YYESTGPQEE RSSKQSAVYS ESTVSSDMFD KVLLCSGGNN ESALRKELSE  300
VTKSVTKSAP QNSHSRGSSG GKNRGKKQGS KRNVIDLRTL LTLCAQAVAS DDRRTANEFL  360
KQVREHSSPT GDGMQRLAHY FANGLEARLA GSGTEIYKSL INKPTSAADV LKAYHIYVAT  420
CPFRKISNFF ANKTIMNVSQ KVTRLHIIDF GILYGFQWPC FLQRLSSRPG GPPKLRVTGI  480
DLPCPGFRPL ERVEETGRRL ACYAEVFKVP FEFNAIAQKW ETIKLEDLKI DKDELLVVNC  540
LYVFRYLLDE TVVVNSPRNI VLNLVRKMNP AVFVLGIVNG AYNAPFFITR FREAMFHYSS  600
FFDMLEANIP REIHERMLLE KIVFGQEAMN VIACEAAERI ERPEPYKQWQ VRNMRAGFEQ  660
LPLDKEIMQM AKNRVETSYH KDFVIDADGG WLLQGWKGRI VYALSSWRPA Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein