PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN00565.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LBD

Protein Properties

Length: 282aa MW: 31072.2 Da PI: 8.0016

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN00565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.7	1.4e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e+ PIN00565.1 4 SCNGCRVLRKGCSENCSIRPCLewiksPDSQANATVFLAKFYGRAGLMNLINAGPPHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQSAVEA 102 6*************************************************************************************************9 PP DUF260 95 allke 99 +l+++ PIN00565.1 103 VLRGA 107 98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MRMSCNGCRV LRKGCSENCS IRPCLEWIKS PDSQANATVF LAKFYGRAGL MNLINAGPPH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQSAV EAVLRGAPIT RIASEAAESK 120 NGPPLKAYDI RHVNKEDNLS GTSDLQRVRT RCRFKRTGRK VKRSRLCVGS REETGREEVN 180 RSSSHESSLS HLSEAAEPNF ERESQDSESL ASAMNPEPES DSSREDERRA DDGEIELDLT 240 LGFKPFKGCM KPKELAMKEA VGSAEGHAGC CKMELGLDYP AS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-91	LBD family protein