PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM99669.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

CO-like

Protein Properties

Length: 380aa MW: 42382.2 Da PI: 5.0843

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM99669.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.9	3.1e-06	47	89	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C++++ +++ C + + lC++C ++H + H++++ PIM99669.1 47 VCERCHYQPAVVRCIEENISLCQNCNWSGHASpasataHKRQT 89 8*****************************8889999998765 PP
2	CCT	65.3	1.8e-22	323	366	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a+lRYkeK+k R+F+KkirY+sRKa+A+ R+RvKGrFvk+ PIM99669.1 323 RDGAVLRYKEKKKARQFDKKIRYASRKARADVRKRVKGRFVKAG 366 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MGKLCDFCGE QRSMVCCRSD AACLCLSCDR HVHSANALSK RHLRTLVCER CHYQPAVVRC 60 IEENISLCQN CNWSGHASPA SATAHKRQTV NCYSECPSAA EFSRIWSFFS VDQSSCDREA 120 GSMILEDGDE SLPELQLLPI DHCTEDAAMD SMASDIEQIH GSGSLNPLSP KACSPRIKHH 180 ESIHDTLYED FDISDIELGM ENCEAHIDEF LDDPQQYFEN GGIDSLFETG NLCGAECNVE 240 CAHAAKGSSP QSETMQPACS NQLSTDSITS CKSDQNACMS RPGQSTLPPN NGDHPEYEGF 300 SMVVMEEYPH YIPYPENQFL ASRDGAVLRY KEKKKARQFD KKIRYASRKA RADVRKRVKG 360 RFVKAGEPYD YDPLEVTSTH

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MGKLCDFCGE QRSMVCCRSD AACLCLSCDR HVHSANALSK RHLRTLVCER CHYQPAVVRC  60
IEENISLCQN CNWSGHASPA SATAHKRQTV NCYSECPSAA EFSRIWSFFS VDQSSCDREA  120
GSMILEDGDE SLPELQLLPI DHCTEDAAMD SMASDIEQIH GSGSLNPLSP KACSPRIKHH  180
ESIHDTLYED FDISDIELGM ENCEAHIDEF LDDPQQYFEN GGIDSLFETG NLCGAECNVE  240
CAHAAKGSSP QSETMQPACS NQLSTDSITS CKSDQNACMS RPGQSTLPPN NGDHPEYEGF  300
SMVVMEEYPH YIPYPENQFL ASRDGAVLRY KEKKKARQFD KKIRYASRKA RADVRKRVKG  360
RFVKAGEPYD YDPLEVTSTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-87	CO-like family protein