PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM99565.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 346aa MW: 37932.8 Da PI: 7.1968

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM99565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1e-08	100	124	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ GtC+y +C+FaH+ PIM99565.1 100 YKTKLCCKFRA-GTCPYITNCNFAHS 124 9********.***********8 PP
2	zf-CCCH	17.4	7.8e-06	171	196	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yG++C+F H+ PIM99565.1 171 YKGRHCKKFYTEEGCPYGENCTFLHD 196 78888********************7 PP
3	zf-CCCH	42.3	1.2e-13	232	257	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg PIM99565.1 232 WKTRICNKWELTGYCPFGSKCHFAHG 257 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MDYRRESGFS DGNVVQILAG NSGNTVNENW GASATDQLVW ATEDDYGMWN NEASIDNSNY 60 EVRPSQSRSG SEPPSKRSRS SQSGDLMTSN RSKAIGKMFY KTKLCCKFRA GTCPYITNCN 120 FAHSIEELRK PPPNWQEIVA AHEDDRGASS EPREEFQIPI VGVTDDAQRS YKGRHCKKFY 180 TEEGCPYGEN CTFLHDEQSK ARESVAISLG PGSGGGGYGS NGNGSTLKPS NWKTRICNKW 240 ELTGYCPFGS KCHFAHGAAE LHRYGGGPLD SEVKDPTTPD AKQGAPPAKT SVETAVATTP 300 HSDGYHIGVP SQRLSNAIQK TAQRPTNKWK GPDKISKIYG DWIDDL

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MDYRRESGFS DGNVVQILAG NSGNTVNENW GASATDQLVW ATEDDYGMWN NEASIDNSNY  60
EVRPSQSRSG SEPPSKRSRS SQSGDLMTSN RSKAIGKMFY KTKLCCKFRA GTCPYITNCN  120
FAHSIEELRK PPPNWQEIVA AHEDDRGASS EPREEFQIPI VGVTDDAQRS YKGRHCKKFY  180
TEEGCPYGEN CTFLHDEQSK ARESVAISLG PGSGGGGYGS NGNGSTLKPS NWKTRICNKW  240
ELTGYCPFGS KCHFAHGAAE LHRYGGGPLD SEVKDPTTPD AKQGAPPAKT SVETAVATTP  300
HSDGYHIGVP SQRLSNAIQK TAQRPTNKWK GPDKISKIYG DWIDDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-120	C3H family protein