PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIM99332.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 17498.7 Da PI: 8.0648 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.8 | 1.2e-40 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC++apyfp+++p++fa+vhk++Gasnv k+l++lp ++r +a++sl yeA +r++dPvyG+vg+i+ l+qq+ +++ +la++++ PIM99332.1 5 RCAACKHLRRRCPSDCIFAPYFPSNNPRRFAYVHKIYGASNVGKILQDLPVNRRAEAADSLHYEAYCRIKDPVYGCVGMITILHQQIYNAQCQLARIQA 103 6**********************************************************************************************9998 PP DUF260 100 e 100 e PIM99332.1 104 E 104 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence |
MNSTRCAACK HLRRRCPSDC IFAPYFPSNN PRRFAYVHKI YGASNVGKIL QDLPVNRRAE 60 AADSLHYEAY CRIKDPVYGC VGMITILHQQ IYNAQCQLAR IQAEIAALNA QSQSEVQHYN 120 QHQVESTGSG LSPSLLLDQN GGPNSTPFHD ISTWFD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 3e-49 | LBD family protein |