PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM99086.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

HB-PHD

Protein Properties

Length: 800aa MW: 88599.2 Da PI: 4.7242

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM99086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.6	8.9e-13	684	725	11	52
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++L + F++n+yp+++ + LA++lgLt rqV WF N R PIM99086.1 684 VTQRLYASFNQNQYPDKAVKVNLAEELGLTVRQVAKWFENAR 725 6899************************************99 PP
2	PHD	39.6	1.2e-13	314	369	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCdg C++ fH+ Cl+++l +e++p g wlC+ C++k PIM99086.1 314 FCAKCGSkdLTLDNDIILCDGaCERGFHQFCLQPPLLKEDIPPGdeGWLCPGCDCK 369 699*965555****66****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence
MGLVNGTQEL GSNLTEQSKT SENLAQYPKC ESLTSNKCEE MDCERLVTEM ADQKEISGAQ 60 IIEKKLVSRE ERSDRIEERG QNSGESPQNV GMGKQESVLE NVKILSVENL ESASQNGLSL 120 ENMGIAPGRA FFNPGNGRIE VEQIDMTNDC GHLENEGKRS SRKSRKRKAK LEGPVTSSWS 180 LRSKSQEKLK ASEPNDTEVV SANAEKKRRR RKKKQLKKNT VNEFSRTRTH LRYLLHRIKY 240 EQSLIDAYSS EGWKGQSLEK LKPEKELQRA KSHILRYKLK IRALFQRLDL SLAVGKLPES 300 LFDSHGEIDS EDIFCAKCGS KDLTLDNDII LCDGACERGF HQFCLQPPLL KEDIPPGDEG 360 WLCPGCDCKV DCIEMLKDFQ GTKVSVTDSW EKIFPEAAAA ASGKKLDDGS GSSSDDSEDD 420 DYDPDKPDTA ENVEGDESSS DESNYFSASD DLGVSTNNEK HLGLPSDDSE DDDFDPSATD 480 PDKQVQDSSS SDFTSDSEDL DALLEDETVP DKDLGPIVPS ADHEQPSTGS KAESFEVGRI 540 RGQSLKNELS DLMEAGAEPV SGKRHIERLD YKKLHDETYG NSSSDSSDED FGDEDLDDED 600 FDDATPRKRA KTDSEKTESK SLHKTPIAKD NINTKDESEN KSIHKPKRIG KNDADVATNG 660 SSAEVGSAST GTKKSAPKRL GEAVTQRLYA SFNQNQYPDK AVKVNLAEEL GLTVRQVAKW 720 FENARWSFHH RPRAEPNSDK PPEPQPTIDT DNTKSNQNVE LHAATSAQEH ITEATESVVA 780 NTSGENSGTR KTRKKKGKLT

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence

MGLVNGTQEL GSNLTEQSKT SENLAQYPKC ESLTSNKCEE MDCERLVTEM ADQKEISGAQ  60
IIEKKLVSRE ERSDRIEERG QNSGESPQNV GMGKQESVLE NVKILSVENL ESASQNGLSL  120
ENMGIAPGRA FFNPGNGRIE VEQIDMTNDC GHLENEGKRS SRKSRKRKAK LEGPVTSSWS  180
LRSKSQEKLK ASEPNDTEVV SANAEKKRRR RKKKQLKKNT VNEFSRTRTH LRYLLHRIKY  240
EQSLIDAYSS EGWKGQSLEK LKPEKELQRA KSHILRYKLK IRALFQRLDL SLAVGKLPES  300
LFDSHGEIDS EDIFCAKCGS KDLTLDNDII LCDGACERGF HQFCLQPPLL KEDIPPGDEG  360
WLCPGCDCKV DCIEMLKDFQ GTKVSVTDSW EKIFPEAAAA ASGKKLDDGS GSSSDDSEDD  420
DYDPDKPDTA ENVEGDESSS DESNYFSASD DLGVSTNNEK HLGLPSDDSE DDDFDPSATD  480
PDKQVQDSSS SDFTSDSEDL DALLEDETVP DKDLGPIVPS ADHEQPSTGS KAESFEVGRI  540
RGQSLKNELS DLMEAGAEPV SGKRHIERLD YKKLHDETYG NSSSDSSDED FGDEDLDDED  600
FDDATPRKRA KTDSEKTESK SLHKTPIAKD NINTKDESEN KSIHKPKRIG KNDADVATNG  660
SSAEVGSAST GTKKSAPKRL GEAVTQRLYA SFNQNQYPDK AVKVNLAEEL GLTVRQVAKW  720
FENARWSFHH RPRAEPNSDK PPEPQPTIDT DNTKSNQNVE LHAATSAQEH ITEATESVVA  780
NTSGENSGTR KTRKKKGKLT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	211	KKRRRR
2	206	212	KKRRRRK
3	206	213	KKRRRRKK
4	206	214	KKRRRRKKK
5	207	212	KKRRRR
6	207	213	KKRRRRK
7	208	214	KKRRRRK
8	606	612	PRKRAKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-84	HB-PHD family protein