PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM99002.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

Trihelix

Protein Properties

Length: 426aa MW: 49443.4 Da PI: 6.8795

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM99002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.2	2.6e-24	114	211	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+ +v++Li+a++++ e+ +g+ +kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ ++d ++ PIM99002.1 114 KWTDTMVRLLITAVSYISEEAAAGNgigtrrkcsnlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtACEVVENPELLDIMD 211 7*******************99888888899999********************************************5599999999999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MDGNQASRNI LQGNGSYGSF NLQEPMRIHH HQHQHNSHSR QGSSIVHPTI HENFPLTIGS 60 HPDCDQTVSL AEYTKLDRGK CASDEDEPSF TEDAADGCNN PSKGKKASPW HRVKWTDTMV 120 RLLITAVSYI SEEAAAGNGI GTRRKCSNLQ KKGKWKSVSK VMAERGHFVS PQQCEDKFND 180 LNKRYKRLNE ILGRGTACEV VENPELLDIM DHISEKAKEE VRKILSSKHL HYEEMCSYHN 240 GNRLHLPPDP ELQRSLRLAL KSRDDHEEND VKRYPHEDND EVDEEAKFDD NGECEENHGL 300 LGNSAKKIKQ CDDFSLRNSL SSLDCNKSFN FQTDNAKLDA NQVTKTNTVL QKQWKNHRNL 360 QLEEQRLHLD LKMLELEKER FKWQRFCRKK ERELEMMRME IEQMKLENER MVLELKRREM 420 GIIDSN

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MDGNQASRNI LQGNGSYGSF NLQEPMRIHH HQHQHNSHSR QGSSIVHPTI HENFPLTIGS  60
HPDCDQTVSL AEYTKLDRGK CASDEDEPSF TEDAADGCNN PSKGKKASPW HRVKWTDTMV  120
RLLITAVSYI SEEAAAGNGI GTRRKCSNLQ KKGKWKSVSK VMAERGHFVS PQQCEDKFND  180
LNKRYKRLNE ILGRGTACEV VENPELLDIM DHISEKAKEE VRKILSSKHL HYEEMCSYHN  240
GNRLHLPPDP ELQRSLRLAL KSRDDHEEND VKRYPHEDND EVDEEAKFDD NGECEENHGL  300
LGNSAKKIKQ CDDFSLRNSL SSLDCNKSFN FQTDNAKLDA NQVTKTNTVL QKQWKNHRNL  360
QLEEQRLHLD LKMLELEKER FKWQRFCRKK ERELEMMRME IEQMKLENER MVLELKRREM  420
GIIDSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	378	390	KERFKWQRFCRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-126	Trihelix family protein