PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM98240.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 453aa    MW: 50564.6 Da    PI: 5.1745
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM98240.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.18.8e-91444382374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlta 98 
                 ++lL++cA a++++d +laq++++ l++ as++gdp+qRla+yf++AL ++ +r ++++++  +  +      s+ +++++l  ++++ P+++f++ + 
  PIM98240.1  44 EKLLVHCASALENDDVTLAQQVMWVLNNVASSTGDPNQRLASYFLRALISKASRVCPTTMNFNAGGSG---AISRPMSVTELagYVDLIPWHRFGFCAS 139
                 689***************************************************88877754444444...4777778887788*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl............. 181
                 N aIl+a++g ++vHi+Df+i++++QWp+L++aLa+  egpp+lRi +++ + ++    + ++ee+g+rL++fA++ +vpfefnv+             
  PIM98240.1 140 NGAILKAIQGLQKVHILDFSITYCMQWPTLIDALAKGHEGPPMLRISVLSWKPKVppfLNVSIEEIGQRLTNFAKSKDVPFEFNVVevgnvpqessldd 238
                 **************************************************97777899999**************************999997777777 PP

        GRAS 182 ....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl 271
                     +   l +l+ ++L+++ +Eal+Vn++  l +l+de+ + +      rd++L+++k+l P++v+vv++++d+  s+ +  r++ +++y +  fd+l
  PIM98240.1 239 vtlhYNLLLRQLNASTLKLRDDEALVVNCQNWLRYLPDEQSENSCnqisFRDSFLDTIKNLCPNLVTVVDEDCDLgVSSGLSSRIMTCFNYLWIPFDAL 337
                 665333356667999999999****************8765543334558*************************8899******************** PP

        GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                 e+ lp++s +r+ +E+  +g +i+n+v  eg +r+er e+  k +er+++ GF +vp+ e++ k++k ll +++  g+ ++++++ l+l+Wk+++ v +
  PIM98240.1 338 ETFLPKNSTQRMEYEAD-IGHKIENIVGFEGYQRVERLESGTKMSERMGKIGFVSVPFCEETIKEVKVLLDEHA-SGWGMKKDEDMLILTWKGHNSVYA 434
                 *****************.********************************************************.8899******************** PP

        GRAS 371 SaWr 374
                 S+W+
  PIM98240.1 435 SVWT 438
                 ***5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    
MKAELRGNSS SLSLRNPNLF TNTHSSISGP WTGCLNTLDG ACIEKLLVHC ASALENDDVT  60
LAQQVMWVLN NVASSTGDPN QRLASYFLRA LISKASRVCP TTMNFNAGGS GAISRPMSVT  120
ELAGYVDLIP WHRFGFCASN GAILKAIQGL QKVHILDFSI TYCMQWPTLI DALAKGHEGP  180
PMLRISVLSW KPKVPPFLNV SIEEIGQRLT NFAKSKDVPF EFNVVEVGNV PQESSLDDVT  240
LHYNLLLRQL NASTLKLRDD EALVVNCQNW LRYLPDEQSE NSCNQISFRD SFLDTIKNLC  300
PNLVTVVDED CDLGVSSGLS SRIMTCFNYL WIPFDALETF LPKNSTQRME YEADIGHKIE  360
NIVGFEGYQR VERLESGTKM SERMGKIGFV SVPFCEETIK EVKVLLDEHA SGWGMKKDED  420
MLILTWKGHN SVYASVWTPR DSGFGQWENS ISN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-118GRAS family protein