PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM98080.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 584aa    MW: 63800.1 Da    PI: 4.9126
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM98080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.91.6e-1372165791374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++++++la+al++++  la ++  +m+++a+yf+eALa+++++    +     p+++ e++ s++l++   f+++ P+lkf+h+taN
  PIM98080.1 216 LVHTLMACAEAVQQENMKLADALVKHVGRLAVSQVGAMRKVATYFAEALARKIYK----I----YPQDSLETSYSDVLQM--HFYDTAPYLKFAHFTAN 304
                 689***************************************************9....4....4555554556666555..4**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIle+++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+++++++l+e+g++La++Ae++gv+fef+ +va++l+dl+ ++L+++p
  PIM98080.1 305 QAILESFAGATRVHVIDFGLNQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQEVGWKLAQLAESIGVEFEFRGFVANSLADLDANMLDIRP 403
                 *************************************************************************************************** PP

        GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgrei 294
                    E++aVn+v+++hrll++++++++    vL+ +k ++Pk+v++veqea+hn++ Fl+rf eal+yys++fdsl + +l++ ++++i++ +++lgr+i
  PIM98080.1 404 snVETVAVNSVFEMHRLLARPGAVDK----VLNSIKAMNPKIVTIVEQEANHNGNVFLDRFNEALHYYSTMFDSLeSCGLSQPNSQDIVMTEVYLGRQI 498
                 999***************99999988....*********************************************8889******************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +nvva egaer+erhetl++Wr r+++aGF+p +l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++r+L+++SaWr
  PIM98080.1 499 CNVVAYEGAERVERHETLAQWRGRMKSAGFEPEHLGSNAFKQASMLLAVFAgGDGYRVEENDGCLMLGWHTRSLIATSAWR 579
                 ********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    
MKRDRDRGKV EAAVSGSATA PSAAKTKMWA EPPQPDAGMD ELFAVLGYKV KSSDMADVAE  60
KLEQLEMAMG TTMEEGAAVL STDTVHFNPS DLPGWVESML SELSNSYNFA MIQSQIGISG  120
ESSSSNQISF SNDRQAVQQD GAKFIYDDDL RAIPGGAIFS NKQKDVVDSE NENKRMKSST  180
GSEFTEKGSS LAGAADAATA ARPMVLVDSQ ETGVRLVHTL MACAEAVQQE NMKLADALVK  240
HVGRLAVSQV GAMRKVATYF AEALARKIYK IYPQDSLETS YSDVLQMHFY DTAPYLKFAH  300
FTANQAILES FAGATRVHVI DFGLNQGMQW PALMQALALR PGGPPTFRLT GIGPPQPDNT  360
DALQEVGWKL AQLAESIGVE FEFRGFVANS LADLDANMLD IRPSNVETVA VNSVFEMHRL  420
LARPGAVDKV LNSIKAMNPK IVTIVEQEAN HNGNVFLDRF NEALHYYSTM FDSLESCGLS  480
QPNSQDIVMT EVYLGRQICN VVAYEGAERV ERHETLAQWR GRMKSAGFEP EHLGSNAFKQ  540
ASMLLAVFAG GDGYRVEEND GCLMLGWHTR SLIATSAWRL RAAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein