PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU30658.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 795aa MW: 89097.4 Da PI: 6.8929

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU30658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	115.8	2.3e-36	145	222	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++Cead+se+k yh+rh+vC +++a++vl++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++ PHU30658.1 145 RCQVPDCEADISELKGYHKRHRVCLRCANASAVLLDGHNKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKAT 222 6*************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence
MDNQAFSPSQ TGAATRLANT HMTFSGVHDD PAASSLFDWA DLLEFNLDEQ LTISFDDQLR 60 PPPETQPMMG PVIPSSEDSP QSQDTEAGRI RKRDPRMVCS NFLAGRIPCA CPELDEKMEE 120 EELAGIGPGK KRARTVRASA GAGARCQVPD CEADISELKG YHKRHRVCLR CANASAVLLD 180 GHNKRYCQQC GKFHILSDFD EGKRSCRRKL ERHNNRRRRK ATDSSKTSAE KESQQVTMAD 240 DGSGDDDIVK DSTCMGSQLG EKEILLESEG HVPIDSTQGI QNNHSDSFTA SGETQADAEK 300 ENFKSSHSPS YYDSKSGFSS ACPTGRISFK LYDWNPAEFP RRLRHQIFQW LASMPVELEG 360 YIRPGCTILT VFVAMPTFKW GKLLKDPAAH LYELIASPGN MLRGRGNFLV YLNDMVFRVT 420 KGGDSIVKVK LKGPAPKLKS IHPMCFEAGK PMEFIACGNN LMQPRFRFLV SFGGTYLGND 480 TNVVPSGCKS DGDSSSMDHQ LLKIHVPRTE AGLFGPAFVE VENESGLSNF IPILIAEKDI 540 CAEMKEIQRK FCSGVSERTA VCSPCEASTS RKSEFSEFML DVAWLLREPS AENVQILASV 600 QMQRFNYLLN ILMESQSTII LERVLSYFEN MVKRNMLAGI TDADMRLFQR NIREKNNLLK 660 ERLHRKEYFA GDSRQIMLEA NTSSQIFQNH MLSVFPVINQ DTEVPDKHNI EFDSTYWEGT 720 STVPLLDAEL ALRVKEEQSV KSCGFLVRRT VVTSRTLVFL ITGFAVCLGL CATFLHPRKV 780 GEFAMTIRRC LFDRN

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence

MDNQAFSPSQ TGAATRLANT HMTFSGVHDD PAASSLFDWA DLLEFNLDEQ LTISFDDQLR  60
PPPETQPMMG PVIPSSEDSP QSQDTEAGRI RKRDPRMVCS NFLAGRIPCA CPELDEKMEE  120
EELAGIGPGK KRARTVRASA GAGARCQVPD CEADISELKG YHKRHRVCLR CANASAVLLD  180
GHNKRYCQQC GKFHILSDFD EGKRSCRRKL ERHNNRRRRK ATDSSKTSAE KESQQVTMAD  240
DGSGDDDIVK DSTCMGSQLG EKEILLESEG HVPIDSTQGI QNNHSDSFTA SGETQADAEK  300
ENFKSSHSPS YYDSKSGFSS ACPTGRISFK LYDWNPAEFP RRLRHQIFQW LASMPVELEG  360
YIRPGCTILT VFVAMPTFKW GKLLKDPAAH LYELIASPGN MLRGRGNFLV YLNDMVFRVT  420
KGGDSIVKVK LKGPAPKLKS IHPMCFEAGK PMEFIACGNN LMQPRFRFLV SFGGTYLGND  480
TNVVPSGCKS DGDSSSMDHQ LLKIHVPRTE AGLFGPAFVE VENESGLSNF IPILIAEKDI  540
CAEMKEIQRK FCSGVSERTA VCSPCEASTS RKSEFSEFML DVAWLLREPS AENVQILASV  600
QMQRFNYLLN ILMESQSTII LERVLSYFEN MVKRNMLAGI TDADMRLFQR NIREKNNLLK  660
ERLHRKEYFA GDSRQIMLEA NTSSQIFQNH MLSVFPVINQ DTEVPDKHNI EFDSTYWEGT  720
STVPLLDAEL ALRVKEEQSV KSCGFLVRRT VVTSRTLVFL ITGFAVCLGL CATFLHPRKV  780
GEFAMTIRRC LFDRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	219	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein