PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU30609.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 450aa MW: 50740.9 Da PI: 5.1507

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU30609.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.7	3.7e-15	53	100	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l +++ G g+W++ ++ g+ R++k+c++rw +yl PHU30609.1 53 RGRWTAEEDQILTNYILSNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 100 8*****************************99**********97 PP
2	Myb_DNA-binding	53	7.7e-17	106	151	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+ +++++++ lG++ W++Ia +m+ gRt++++k++w+++l PHU30609.1 106 RGNITSQEENIIIKLHATLGNR-WSLIAGHMP-GRTDNEIKNYWNSHL 151 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MVSLFIGTGL ITLPPHCHFN SNIIIRRERE SYYWCWYANM GRAPCCEKVG LKRGRWTAEE 60 DQILTNYILS NGEGSWRSLP KNAGLLRCGK SCRLRWINYL RSDLKRGNIT SQEENIIIKL 120 HATLGNRWSL IAGHMPGRTD NEIKNYWNSH LSRKVESLRI PSDEKLPQAV VDLAKKGALM 180 PIKQSRKTSR ISNMKKNKTS KNSNLAEPKE AKENSTSGPL SASAVSIPST LNMEKEALSS 240 TISSWLDGKN MPASDSAMDS MQEDVADVAA PNPRVGSRES HSSLSSEDCD MEWLEEIMPD 300 VVINDQDMDP NFILSSLENG QGETPLNETG NNYCRTTHRI DERNKTVSSQ EAVSSTNEKS 360 RLLMEAANDG RLEWDWQDDH ELVWPAMSWE LETKQENIGS SSIPSWPLWD TGTDLLQNFM 420 NHEDPVEIDS MHIMSENDQN PSALAAWLLS

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MVSLFIGTGL ITLPPHCHFN SNIIIRRERE SYYWCWYANM GRAPCCEKVG LKRGRWTAEE  60
DQILTNYILS NGEGSWRSLP KNAGLLRCGK SCRLRWINYL RSDLKRGNIT SQEENIIIKL  120
HATLGNRWSL IAGHMPGRTD NEIKNYWNSH LSRKVESLRI PSDEKLPQAV VDLAKKGALM  180
PIKQSRKTSR ISNMKKNKTS KNSNLAEPKE AKENSTSGPL SASAVSIPST LNMEKEALSS  240
TISSWLDGKN MPASDSAMDS MQEDVADVAA PNPRVGSRES HSSLSSEDCD MEWLEEIMPD  300
VVINDQDMDP NFILSSLENG QGETPLNETG NNYCRTTHRI DERNKTVSSQ EAVSSTNEKS  360
RLLMEAANDG RLEWDWQDDH ELVWPAMSWE LETKQENIGS SSIPSWPLWD TGTDLLQNFM  420
NHEDPVEIDS MHIMSENDQN PSALAAWLLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	2e-74	MYB family protein