PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU30560.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 695aa    MW: 79334.5 Da    PI: 4.8718
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU30560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.64.7e-932175871374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilkfs 94 
                 lv+ Ll+++e v++++++la++l++r    as +g+p+qRl +yft+AL++r++rs+ +   + + ++    +     s  + aa  + +++ P+ ++ 
  PHU30560.1 217 LVHHLLAAVEEVNNQQFHLASKLISRCMWVASDSGTPVQRLSFYFTKALEERIHRSTGRYTCTDEDRHL---KyiktkSLGTNAASLTCHQLIPFNQVM 312
                 6899***************************************************44433322222222...12222244444455559********** PP

        GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                 +++a q+I+e v++++++H iDf+i  G+QW+ L+qaLa++  ++   l+iT+vgs   ++ke++e tg+ L++fA++lg+pf+f+++ +++++d++ e
  PHU30560.1 313 QFAAVQTIVENVKSAKKIHLIDFNIRSGIQWIVLIQALAEKGdSPIELLKITAVGS---TEKENYEVTGNTLHSFAKSLGLPFSFDIVFVSDMKDFKKE 408
                 ****************************************98344559********...579************************************* PP

        GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                 +++++++E++aV l + l ++  ++ +l    d+++k+v+s++P+++vv e ea+hns+sFl+rf+e+l +ysa+fd++e  + r+s  r+++E++++g
  PHU30560.1 409 SINIETDETVAVYLNFILRTMIPRPDCL----DNLMKVVRSIRPTIIVVGEVEANHNSPSFLNRFIETLFFYSAFFDCFEDCMDRDSPCRTTIEEVYFG 503
                 ****************999999555555....55***************************************************************** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + ++n+va+eg++r+ r+ +le Wr+ +e++G+ + +lse+   qa+l+l++++ s    ++++ + l++gWk+ p+ s+S W+
  PHU30560.1 504 EGVRNIVAAEGEDRFTRNVKLEVWRAFFERFGMMEEELSESSWYQADLILKQFAqSSSCDLHKDGKGLIIGWKGTPIHSLSIWK 587
                 ******************************************************8899*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    
MPNVSISNEN FSDFQDDQFH LNGYEGGVVV NGIEDPWFEH IDYVDIDSFY SMFGPNNEED  60
TSDLQVRINL LEDQQQSILD WMQNHFPTNT VMPLQPVQIQ PTVEIPGNDD LQTQVPERGN  120
DSNEKPNPFS LASLELLKNY GRLSKNSSEE NLSTNALNFE ACLGNRHKLS MEEILRVAAE  180
RYIQYSTRKR DGLSRFIHPY GSALSGLCME ETRDVELVHH LLAAVEEVNN QQFHLASKLI  240
SRCMWVASDS GTPVQRLSFY FTKALEERIH RSTGRYTCTD EDRHLKYIKT KSLGTNAASL  300
TCHQLIPFNQ VMQFAAVQTI VENVKSAKKI HLIDFNIRSG IQWIVLIQAL AEKGDSPIEL  360
LKITAVGSTE KENYEVTGNT LHSFAKSLGL PFSFDIVFVS DMKDFKKESI NIETDETVAV  420
YLNFILRTMI PRPDCLDNLM KVVRSIRPTI IVVGEVEANH NSPSFLNRFI ETLFFYSAFF  480
DCFEDCMDRD SPCRTTIEEV YFGEGVRNIV AAEGEDRFTR NVKLEVWRAF FERFGMMEEE  540
LSESSWYQAD LILKQFAQSS SCDLHKDGKG LIIGWKGTPI HSLSIWKFLH DYKLCKSAQL  600
STFFSTADSL ENVGSYPKSS WYYMSDSSEC EKFTKMMAAA GDNKRDKAEN YSIEHLVDDM  660
AGAEDCFEGR RIHISRTKNI CLQKFSGVEV ASWIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-57GRAS family protein