PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU30394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 31547.6 Da PI: 9.794 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll +++k++G g W++ +++ g+ R++k+c++rw +yl PHU30394.1 14 KGAWTAKEDMLLTEYIKEHGEGtGWRALPKKAGLLRCGKSCRLRWVNYL 62 79********************99*********99************97 PP | |||||||
2 | Myb_DNA-binding | 56.2 | 7.6e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T+eEd+l+v++ ++lG++ W++Ia +++ gRt++++k++w+++l PHU30394.1 68 RGTFTPEEDDLIVRLYTLLGSR-WSLIAGRIP-GRTDNDIKNYWNTHL 113 899*******************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence |
MGRKPCCSKE GLKKGAWTAK EDMLLTEYIK EHGEGTGWRA LPKKAGLLRC GKSCRLRWVN 60 YLKPGLKRGT FTPEEDDLIV RLYTLLGSRW SLIAGRIPGR TDNDIKNYWN THLLKKLKAQ 120 GNEPRRHKSI RKSKEKEKAS SQKKQTRNQK TKERKKKRKI AENDSNIEER EQVAKKTEEQ 180 LQMQDFSQAV SENNYNFTGS SCSQDGTSSG ASTSEINLEE NNYNSGIYEK FQVIDELLLN 240 DQWTEYNNES HMMLKEIYEE YFQLVSKNSL SF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 132 | LKKLKAQGNEPRRHKSIRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-62 | MYB family protein |