PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU29529.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 303aa    MW: 34983.9 Da    PI: 7.966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU29529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.2e-14651146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
       PHU29529.1  6 KGPWKAEEDEVLIKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 51
                     79*************************8887799**********87 PP
2Myb_DNA-binding46.58.2e-1562101344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++eE+   +++ +q+G++ W++Ia +m+ gRt++++k++w
       PHU29529.1  62 KFSAEEERTVIELQAQFGNK-WARIATYMP-GRTDNDVKNFW 101
                      79******************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MSEIKKGPWK AEEDEVLIKH VKKYGPRDWS SIRSKGLLQR TGKSCRLRWV NKLRPNLKNG  60
VKFSAEEERT VIELQAQFGN KWARIATYMP GRTDNDVKNF WSSRQKRLAK ILRNSPPQPN  120
KPQKCIHREA PPATQKVPSV EAPKLNSSAE ERPLSMSQDC SSSYMNNFET TSMVPLRELV  180
NSTSLPFEQE LLPLEFTPNE KRTSIWPQFP LSFPQIPLQT TFDHPLGHQE LPMKLEDTNF  240
LDYFDMGNVQ VPLAPSCSGQ ERTSEIAMKR EIMDYPLTPD SFIHDFPMDM FDYIDPLPSP  300
SEW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.17e-73MYB family protein