PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU29428.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 509aa MW: 55269.3 Da PI: 5.5522

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU29428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.6e-16	33	80	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +lvd+v G g+W+++ r+ g+ R++k+c++rw ++l PHU29428.1 33 KGPWTTVEDAILVDYVMTNGEGNWNAVQRHSGLARCGKSCRLRWANHL 80 79******************************************9986 PP
2	Myb_DNA-binding	51.7	2.1e-16	86	129	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ PHU29428.1 86 KGAFTPEEERRILELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 129 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MSITSETDDM MTSKVDMDSP DEASGGESVP LKKGPWTTVE DAILVDYVMT NGEGNWNAVQ 60 RHSGLARCGK SCRLRWANHL RPDLKKGAFT PEEERRILEL HAKMGNKWAR MAAELPGRTD 120 NEIKNYWNTR IKRRQRAGLP VYPPDISFLA NQNKQNEELG AFSSVDAQNS NVLGINNFEI 180 PAVEFKNLQL NHLLYPPPLG EIPAVSSFLA QGHRAPYGST YLLSTMHPSK RIRGSESMFS 240 GSNGDLLLSS SQYHNGGSLL AQPLGFSSYN HHLTYDDDRS FSSVVHGGHA CLNGNSSSSE 300 PTWAMKLELP SLQNQTANWG SPPSPLPSLE SDDILIQSPP AGNSESGSLS PSNSGLLDAV 360 LYESQTMKAS NDNSHQGKET SGDAVNKGWE SYGDPVSPLH HFSASVFGEY TPVNGSSLHE 420 FPSVATMPGC KIKKEIGDLA PLDENDDSLN QTIFSSPKTQ HAKNSLALKE VISSGFFDDC 480 GWDCKQIRAV ATSSGQACGC SSWDAMSAV

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MSITSETDDM MTSKVDMDSP DEASGGESVP LKKGPWTTVE DAILVDYVMT NGEGNWNAVQ  60
RHSGLARCGK SCRLRWANHL RPDLKKGAFT PEEERRILEL HAKMGNKWAR MAAELPGRTD  120
NEIKNYWNTR IKRRQRAGLP VYPPDISFLA NQNKQNEELG AFSSVDAQNS NVLGINNFEI  180
PAVEFKNLQL NHLLYPPPLG EIPAVSSFLA QGHRAPYGST YLLSTMHPSK RIRGSESMFS  240
GSNGDLLLSS SQYHNGGSLL AQPLGFSSYN HHLTYDDDRS FSSVVHGGHA CLNGNSSSSE  300
PTWAMKLELP SLQNQTANWG SPPSPLPSLE SDDILIQSPP AGNSESGSLS PSNSGLLDAV  360
LYESQTMKAS NDNSHQGKET SGDAVNKGWE SYGDPVSPLH HFSASVFGEY TPVNGSSLHE  420
FPSVATMPGC KIKKEIGDLA PLDENDDSLN QTIFSSPKTQ HAKNSLALKE VISSGFFDDC  480
GWDCKQIRAV ATSSGQACGC SSWDAMSAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	1e-71	MYB family protein