PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU29163.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 161aa    MW: 17569.3 Da    PI: 7.3631
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU29163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.21.6e-39131131100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r +++ +l+yeA ar+rdPvyG+vg+i++lqqq  +l+aela+++
  PHU29163.1  13 PCGACKFLRRKCVKGCIFAPYFDSEQgMAHFAAVHKVFGASNASKLLLTIPPNKRLETVVTLCYEALARVRDPVYGCVGHIFTLQQQAVTLQAELAYVQ 111
                 7***********************9988*********************************************************************99 PP

      DUF260  99 ee 100
                 ++
  PHU29163.1 112 AR 113
                 76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
METKNMRSGG GGPCGACKFL RRKCVKGCIF APYFDSEQGM AHFAAVHKVF GASNASKLLL  60
TIPPNKRLET VVTLCYEALA RVRDPVYGCV GHIFTLQQQA VTLQAELAYV QARISTLQQH  120
HLPMPPTQTP SQAEASSVCI DPSIDITDLC NVLDQQLDDS M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-65LBD family protein