PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28563.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GATA

Protein Properties

Length: 537aa MW: 59877.4 Da PI: 7.7309

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28563.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.4	6.1e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ PHU28563.1 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 **************66666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLVNYTPLHA RAEPDDLEDH 60 RVSRFKTFPV KNKEVKILKR KKNQDNPEIG IIPEYNQGFH RKALDEDTSN RSSSGSAVSN 120 TESCGQFGSA EASDLTGPAQ SNIWDATVPS RKRTCVNRPK QSSIEKLTKD LYTILHEQQS 180 SYFSGSSEED LLFESDKPMV SVEIGHGSVL IRHPSSIGRE EESEASSLSV DNKQLSSNEA 240 YSQLTTPPVN IIKGVNSSYL VTQRAKKPPG QGLEHDQIKR NKDHLEKLQI LGHHNSPLCH 300 IDLKDVLNYE EFTKLLSSDE QQQLLKYLPP VDSSSPPESL KCMFESSQFE ENLSSFQKLL 360 AVGVFDNSLP GMTVEECRTL KRFMLCYLMK SKWVEQFKLI KDMKCKNSSS SSEVAGGRNV 420 IGSAHSVNMK RPREGQHPKY LGVNATMKSP KRVAMKNSYE QKEMIDNDGS CFSPKSLFAL 480 PSENSFLFTN DSPDQDLLLH VPSNSSFPQA ELFLPTASFA AQASTSSSSI YPHHVQP

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLVNYTPLHA RAEPDDLEDH  60
RVSRFKTFPV KNKEVKILKR KKNQDNPEIG IIPEYNQGFH RKALDEDTSN RSSSGSAVSN  120
TESCGQFGSA EASDLTGPAQ SNIWDATVPS RKRTCVNRPK QSSIEKLTKD LYTILHEQQS  180
SYFSGSSEED LLFESDKPMV SVEIGHGSVL IRHPSSIGRE EESEASSLSV DNKQLSSNEA  240
YSQLTTPPVN IIKGVNSSYL VTQRAKKPPG QGLEHDQIKR NKDHLEKLQI LGHHNSPLCH  300
IDLKDVLNYE EFTKLLSSDE QQQLLKYLPP VDSSSPPESL KCMFESSQFE ENLSSFQKLL  360
AVGVFDNSLP GMTVEECRTL KRFMLCYLMK SKWVEQFKLI KDMKCKNSSS SSEVAGGRNV  420
IGSAHSVNMK RPREGQHPKY LGVNATMKSP KRVAMKNSYE QKEMIDNDGS CFSPKSLFAL  480
PSENSFLFTN DSPDQDLLLH VPSNSSFPQA ELFLPTASFA AQASTSSSSI YPHHVQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-153	GATA family protein