PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU28478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19602.3 Da PI: 10.1011 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.4 | 3.2e-12 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie+k r+v fskR++g+ KK +E S L++a++ i+f + gk + y PHU28478.1 15 KLIESKEARTVAFSKRKHGLDKKPKEYSYLTGADIDSILFTQAGKSHSY 63 569*****************************************99988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MDKRGGKGRQ KIELKLIESK EARTVAFSKR KHGLDKKPKE YSYLTGADID SILFTQAGKS 60 HSYGSPSVEK VIDKFHELKQ NNSQQNHTDM SKTNVFEAFE DLRKEVQAFK KKDHGSELPT 120 DKYMLENRLK QFEAYKSRLD KIKNQIKGDV PAEQFNFISE VALKLEKMSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 4e-17 | M-type_MADS family protein |