PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU28260.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 335aa    MW: 36391.5 Da    PI: 4.9066
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU28260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.22e-36301212102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++elisw+e+g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+
    PHU28260.1  30 FLTKTYQLVDDPTMDELISWNEDGTTFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANECFRRGEKGLLRDIQ 117
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    PHU28260.1 118 RRKI 121
                   *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MVPSSVEQTG ESNTPAGAGA ENQRSLPTPF LTKTYQLVDD PTMDELISWN EDGTTFIVWK  60
PAEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVVPDRWEF ANECFRRGEK GLLRDIQRRK  120
ISPAPVGTAV TPAVAAATPV MAVNAAQAVT VAVAPAVRIQ ISSSNSGDEQ VLSSNSSPAG  180
TASGAAAAAV LRMTTCTTTP DLIEENERLR KENAQLSQEL NRLRGLCSNV YNLMSNFTAN  240
PADIPAGIPE GRALELLRTG QVTAEVEGGA ADTAEEDINP RLFGVSLGVK RVRRSNDEES  300
DREGRCHDQV QPHGSDVKSE PLDSGSAHHD DQQWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-102HSF family protein