PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28255.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 633aa MW: 70367.4 Da PI: 9.596

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	57	100	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd ll ++vk++ g++Wk Ia++++ gRt+ qc +rwqk+l PHU28255.1 57 WTAEEDNLLTEVVKRFKGRNWKGIAECLN-GRTDVQCLHRWQKVL 100 ***************************.**********986 PP
2	Myb_DNA-binding	56.4	6.9e-18	106	152	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ ++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l PHU28255.1 106 KGPWTKEEDDHIIELVEKFGCKKWSIIAKSLP-GRIGKQCRERWHNHL 152 79****************************.***********97 PP
3	Myb_DNA-binding	49.8	7.6e-16	158	201	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT+ Ed+ l ++++ +G++ W+ Iar ++ gRt++ +k++w++ PHU28255.1 158 RDAWTELEDLVLCRYHQIYGNK-WAEIARFLP-GRTDNAVKNHWNS 201 789*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MIQVKEEALT LEFGGFTSCS SFSDSSYEAS TPRCSSEPGS SCQRSSGQTK RSSQAGWTAE 60 EDNLLTEVVK RFKGRNWKGI AECLNGRTDV QCLHRWQKVL NPELVKGPWT KEEDDHIIEL 120 VEKFGCKKWS IIAKSLPGRI GKQCRERWHN HLDPTIKRDA WTELEDLVLC RYHQIYGNKW 180 AEIARFLPGR TDNAVKNHWN STVKKRLDLN LLSRLGPDIQ SEGSPDFSSH KKKLEIKKHL 240 AQAHNAETLS LSKQAGVDNA ADACSTDLRI GCACSPRNDL HKGTSLFGAC KSSVKNARDL 300 IKPLGGIQFG KAEILPNGET DQSNLNLTKI SDPLLTSLDF PLDPSRKTRW SSSQVKAVHP 360 TTFGRMYESP KRSKYGTVSD TDHDFLTLSL AGFTEVHSQG NKKNKAYDIQ SSLALKQPGF 420 TEVHSKGNKK NKAYDTQSSL VLKQPGFTKI HSRGYKKNKA YDTQSSLAHK QPGFLNYEPP 480 KVKDLTIPLT DENLSRDNII GRQNSHLLCS TPLSLTVSAN SSSPESVLRN SAMSYTKTPS 540 IIRKKTSRFS EASGHYSCTG TTTPMHFLRS VPDREDTSNL KDRISGCKRS VSGKSLGRRL 600 EYAFDMEWDS SRCCTPVSAA SPCAIGANTM LTP

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MIQVKEEALT LEFGGFTSCS SFSDSSYEAS TPRCSSEPGS SCQRSSGQTK RSSQAGWTAE  60
EDNLLTEVVK RFKGRNWKGI AECLNGRTDV QCLHRWQKVL NPELVKGPWT KEEDDHIIEL  120
VEKFGCKKWS IIAKSLPGRI GKQCRERWHN HLDPTIKRDA WTELEDLVLC RYHQIYGNKW  180
AEIARFLPGR TDNAVKNHWN STVKKRLDLN LLSRLGPDIQ SEGSPDFSSH KKKLEIKKHL  240
AQAHNAETLS LSKQAGVDNA ADACSTDLRI GCACSPRNDL HKGTSLFGAC KSSVKNARDL  300
IKPLGGIQFG KAEILPNGET DQSNLNLTKI SDPLLTSLDF PLDPSRKTRW SSSQVKAVHP  360
TTFGRMYESP KRSKYGTVSD TDHDFLTLSL AGFTEVHSQG NKKNKAYDIQ SSLALKQPGF  420
TEVHSKGNKK NKAYDTQSSL VLKQPGFTKI HSRGYKKNKA YDTQSSLAHK QPGFLNYEPP  480
KVKDLTIPLT DENLSRDNII GRQNSHLLCS TPLSLTVSAN SSSPESVLRN SAMSYTKTPS  540
IIRKKTSRFS EASGHYSCTG TTTPMHFLRS VPDREDTSNL KDRISGCKRS VSGKSLGRRL  600
EYAFDMEWDS SRCCTPVSAA SPCAIGANTM LTP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	368	373	ESPKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	2e-82	MYB family protein