PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU27646.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 151aa MW: 17545 Da PI: 8.8181 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.8 | 3.7e-38 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+ rrkC+++Cvla yfpa+qpkkf+n+h+lFG++n++++l++l++e+ + dam+s+++e+++r + Pv G+v+ i++l+qql+ + +el++++ PHU27646.1 9 SCAACKYRRRKCTPKCVLASYFPADQPKKFQNAHRLFGVRNIVRTLEQLDDEDqKADAMKSIIFESDMREKFPVFGCVECISHLRQQLQIALQELQYVN 107 6************************************************666649*****************************************999 PP DUF260 99 ee 100 ++ PHU27646.1 108 RQ 109 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence |
MTGGTSRVSC AACKYRRRKC TPKCVLASYF PADQPKKFQN AHRLFGVRNI VRTLEQLDDE 60 DQKADAMKSI IFESDMREKF PVFGCVECIS HLRQQLQIAL QELQYVNRQL DIYKRRQQQQ 120 QHSTESSVGN GMLMVPFFSS IEDEYSRNHT S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-39 | LBD family protein |