PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU27645.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 159aa MW: 18288.7 Da PI: 8.1044 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.3 | 2.6e-38 | 11 | 112 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++rrkC+++Cvlapyfpa+qpkkf+n+h+lFG++n+ ++l++l++e+ + dam+s+++++++r + PvyG+v+ i+ l+qq + + +el++++ PHU27645.1 11 SCAACKYQRRKCTSQCVLAPYFPANQPKKFQNAHRLFGVRNIARILEQLDDEDqKADAMKSIIFQSDMREKFPVYGCVECIFYLRQQFQIALQELQYVN 109 6************************************************666649*****************************************999 PP DUF260 99 eel 101 ++l PHU27645.1 110 AQL 112 875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence |
MTVKGVTSRV SCAACKYQRR KCTSQCVLAP YFPANQPKKF QNAHRLFGVR NIARILEQLD 60 DEDQKADAMK SIIFQSDMRE KFPVYGCVEC IFYLRQQFQI ALQELQYVNA QLDIYRQQQQ 120 HSSESSVNNG RLSMLPFFSS TEAESISQGI TYSDFDVSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 4e-43 | LBD family protein |