PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27399.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 606aa MW: 70292.8 Da PI: 9.1175

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27399.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.5	9.9e-13	305	384	17	99
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++pk+f+++++++++ l+ +sg++ v++ +++ + +v+ +GW+ Fvk+++L++ D +vFk+dg s+f v++f+ PHU27399.1 305 RIPKRFVTSFKNSNKLLGRKFLTGPSGKTCLVEV--KRTEEDdFVFCNGWEIFVKDHHLDDADLLVFKMDGFSGF--DVTIFDP 384 69******55555555778899******..5555555***********************9887999..8998875 PP
2	B3	50	5.4e-16	503	579	5	85
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 + ++ + +g+l +p+ a+eh+ +k e t+tl+ ++gr+W + r + ++ v+++GW++Fv +n+L+e D++vF+l PHU27399.1 503 M-KPTHVYNGQLKFPRAWAQEHMRQKSE--TITLRIpSTGRTWPASI--RCRMEGLVIQSGWEDFVMDNRLDEFDVCVFELA 579 3.445555678*********988555..7777775689***..899999***********************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MARNCERCRV LERQKYWEEL DKNKSFFIVM MKDFRHRLLL MSGYLTKVLV KKGKPFFVKI 60 NMSPFCKHPD EVADEHTSDQ QRSEDEPSYE EKTCESAAAA DTDEEDNTQE PTKRKSSHGK 120 HYQFHSPQPS KGRKKKKIFE ANQDNRKRKG TPSCKQAKSE NRSTYSNKSQ VPEKEKMRVH 180 QQDSRHSSSV PSVQMTMKPT HVNMGQLKLP KARAQKFMRQ KSETITLRNP SSGMRGPNSL 240 QNGRTEKLNK ILSTKKLFEN VLVTHPTFDQ MNFLHLLTKF DSFEDKLERV PLTKCECFDD 300 FHPTRIPKRF VTSFKNSNKL LGRKFLTGPS GKTCLVEVKR TEEDDFVFCN GWEIFVKDHH 360 LDDADLLVFK MDGFSGFDVT IFDPSACEKE EPSSEDDPPC EEINYGYDDD DDTTDEEDNI 420 QEVTSRKSSH GKQYQFHSPQ PSKGRKKKKI LVAKEDNKKR KCTAEENRCS YSNRRQVAEK 480 EKMRVHQQAS RHTSSVPCVL MKMKPTHVYN GQLKFPRAWA QEHMRQKSET ITLRIPSTGR 540 TWPASIRCRM EGLVIQSGWE DFVMDNRLDE FDVCVFELAL GGKHNSIPVI LDVHIYPVKN 600 EIIGPL

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MARNCERCRV LERQKYWEEL DKNKSFFIVM MKDFRHRLLL MSGYLTKVLV KKGKPFFVKI  60
NMSPFCKHPD EVADEHTSDQ QRSEDEPSYE EKTCESAAAA DTDEEDNTQE PTKRKSSHGK  120
HYQFHSPQPS KGRKKKKIFE ANQDNRKRKG TPSCKQAKSE NRSTYSNKSQ VPEKEKMRVH  180
QQDSRHSSSV PSVQMTMKPT HVNMGQLKLP KARAQKFMRQ KSETITLRNP SSGMRGPNSL  240
QNGRTEKLNK ILSTKKLFEN VLVTHPTFDQ MNFLHLLTKF DSFEDKLERV PLTKCECFDD  300
FHPTRIPKRF VTSFKNSNKL LGRKFLTGPS GKTCLVEVKR TEEDDFVFCN GWEIFVKDHH  360
LDDADLLVFK MDGFSGFDVT IFDPSACEKE EPSSEDDPPC EEINYGYDDD DDTTDEEDNI  420
QEVTSRKSSH GKQYQFHSPQ PSKGRKKKKI LVAKEDNKKR KCTAEENRCS YSNRRQVAEK  480
EKMRVHQQAS RHTSSVPCVL MKMKPTHVYN GQLKFPRAWA QEHMRQKSET ITLRIPSTGR  540
TWPASIRCRM EGLVIQSGWE DFVMDNRLDE FDVCVFELAL GGKHNSIPVI LDVHIYPVKN  600
EIIGPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	149	RKKKKIFEANQDNRKRK
2	134	150	RKKKKIFEANQDNRKRK
3	135	151	RKKKKIFEANQDNRKRK
4	146	176	RKRKGTPSCKQAKSENRSTYSNKSQVPEKEK
5	445	461	RKKKKIFEANQDNRKRK
6	446	462	RKKKKIFEANQDNRKRK
7	447	463	RKKKKIFEANQDNRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	7e-17	B3 family protein