PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27375.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 314aa MW: 35038.4 Da PI: 6.8993

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.6	4.5e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ +l ++k+ PHU27375.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNAAQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQHKLKQVQDDLLAAKK 105 7********************************************************************************************999887 PP DUF260 100 e 100 e PHU27375.1 106 E 106 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MSSSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNAAQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISLLQ HKLKQVQDDL LAAKKELTNY IGPAAMLPIN 120 LQPPGFIPQH HMNVPSSSTM MPFNMNPILG MPTGVPQGGQ LMIRDPQQQQ QQIIEAQQFA 180 AALAAREQRE QQEMLGNYEQ QQQQEQEQHP SQQHDILRFH SGLDSTSSVT ATGFHQMSSP 240 ISPSLVLVGT PENPHNLFPP TGQHGHSYPS YQERQLQSQL LLQQQQPPPQ QPETPRQQQR 300 AKSQEEARST GPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-71	LBD family protein