PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27299.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 578aa MW: 62371 Da PI: 7.942

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27299.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.5	1.4e-24	212	256	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ PHU27299.1 212 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKHVES 256 79****************************************986 PP
2	QLQ	62	1.6e-21	143	179	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+L+an+P+P++Ll +++k PHU27299.1 143 GPFTPSQWMELEHQALIYKHLVANVPIPHQLLIPLKK 179 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MDFGGLVTME AVTVQESETT SNSNGSGQLR KERSGPRDDD TWRSCKVTKP ADDFSTPANL 60 FMRSASPNDG RGRSTMLSFS FPKSEEIPFL CTTNNVPAQD SARTLAFPLF DSGSHYSRAA 120 SAYASASGGS NESSRGPFAR FRGPFTPSQW MELEHQALIY KHLVANVPIP HQLLIPLKKS 180 LNPYAFSGLS AGPYASNWGW GTFHLGFAGN TDPEPGRCRR TDGKKWRCSR EAVPDQKYCE 240 RHINRGRHRS RKHVESQNGH VVSGSTTSKV ASVAPSSSVS VIPSSGTSNN LGAVQHQFNN 300 LQPGAANPST EQLVNRMKDH KGVNMISPTI GLKPKDLAIS VQKQHNGFEL SSQTDFGLVS 360 SDSLLNPSQR NSFVNPKNAN AFLDFNDQEQ SEQHPVHHFI DGWNKEQSSR ASASWPDQLN 420 SDWTQLSMSI PMAASDFASS SSPRQEKLTL SPLRLSRDLD PIQMGLGVAN SYGEGMQKTA 480 NWVPVSWENT LGGPLGEALN NTAGSAGDGK SASAFNLATE VWDNSPPFGS SPTGVLQKST 540 FVSLSNSSSG GSPRGDSKKV HEGIGMCDEV IGSTLAFP

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MDFGGLVTME AVTVQESETT SNSNGSGQLR KERSGPRDDD TWRSCKVTKP ADDFSTPANL  60
FMRSASPNDG RGRSTMLSFS FPKSEEIPFL CTTNNVPAQD SARTLAFPLF DSGSHYSRAA  120
SAYASASGGS NESSRGPFAR FRGPFTPSQW MELEHQALIY KHLVANVPIP HQLLIPLKKS  180
LNPYAFSGLS AGPYASNWGW GTFHLGFAGN TDPEPGRCRR TDGKKWRCSR EAVPDQKYCE  240
RHINRGRHRS RKHVESQNGH VVSGSTTSKV ASVAPSSSVS VIPSSGTSNN LGAVQHQFNN  300
LQPGAANPST EQLVNRMKDH KGVNMISPTI GLKPKDLAIS VQKQHNGFEL SSQTDFGLVS  360
SDSLLNPSQR NSFVNPKNAN AFLDFNDQEQ SEQHPVHHFI DGWNKEQSSR ASASWPDQLN  420
SDWTQLSMSI PMAASDFASS SSPRQEKLTL SPLRLSRDLD PIQMGLGVAN SYGEGMQKTA  480
NWVPVSWENT LGGPLGEALN NTAGSAGDGK SASAFNLATE VWDNSPPFGS SPTGVLQKST  540
FVSLSNSSSG GSPRGDSKKV HEGIGMCDEV IGSTLAFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-100	GRF family protein