PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU26417.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 441aa    MW: 50472 Da    PI: 5.2858
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU26417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.28.1e-31841762103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+ye+l d ++k+lisw++ng+sf+++d+++fa +vLp++F+h+n++SF+ QLn YgFkkv+ ++          eF+h++F++gk + l+kik
    PHU26417.1  84 FVLKIYEMLADIQFKSLISWTNNGTSFIIHDNHRFAVEVLPRFFRHNNLSSFICQLNCYGFKKVNWDK---------FEFRHEWFQRGKGQWLKKIK 171
                   9****************************************************************999.........67****************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rk s+
    PHU26417.1 172 RKPSK 176
                   **886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MEIDRGKGKM TEIDNVVEML GEGYEGLEDV HIDISMLEYD DDDKQCNEVI HGNAVTATAT  60
ATARELLFSS SSNRRNSQKQ GCPFVLKIYE MLADIQFKSL ISWTNNGTSF IIHDNHRFAV  120
EVLPRFFRHN NLSSFICQLN CYGFKKVNWD KFEFRHEWFQ RGKGQWLKKI KRKPSKSQMN  180
EQLTDRQGID ETAAFTIGKE IEEIRAEQAA MREEIIVLQR QLDMFEKEME DINQAGDNLS  240
SKKAKICMLL FNTLLGQAQD GEVEDGVETR GKGNRGEKRK VQVEGELEGD NEGSKKIAGA  300
ADFKSDSYLG KMLMDEMNLN NLAHEQPDNF LESEELAGSS TFWIDYVEKM DHKTIFSGAG  360
PAFSQSQESH LEPLQYTYLL VIMTRKWQIP VACNGHQEDA GRRLCFHIDV LVSLIDCDHR  420
KSVLASLDFW SSKKKQDHKP P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174LKKIKRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-30HSF family protein