PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU26265.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 824aa MW: 91523.4 Da PI: 8.5205

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU26265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	86.5	3.5e-27	31	124	1	92
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC ++ C++ ++fpa+++ +f +vhk+FG +nv+k +k+l++ ++++++s ++eA+ +++dPv+G +g +++l+qql+++k PHU26265.1 31 ACASCKHQRKKCIEGdCAMWRHFPATKMDEFLAVHKVFGIANVTKKIKSLDNVAqQDETIKSFLWEARLWQEDPVHGPLGAYRQLEQQLKEEKR 124 7*********8866******************************6654399******************************99876 PP
2	DUF260	86.5	3.5e-27	433	526	1	92
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC ++ C++ ++fpa+++ +f +vhk+FG +nv+k +k+l++ ++++++s ++eA+ +++dPv+G +g +++l+qql+++k PHU26265.1 433 ACASCKHQRKKCIEGdCAMWRHFPATKMDEFLAVHKVFGIANVTKKIKSLDNVAqQDETIKSFLWEARLWQEDPVHGPLGAYRQLEQQLKEEKR 526 7*********8866******************************6654399******************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence
MPNNNNDNNN NNNYLHNAED ELHEAGSNRP ACASCKHQRK KCIEGDCAMW RHFPATKMDE 60 FLAVHKVFGI ANVTKKIKSL DNVAQQDETI KSFLWEARLW QEDPVHGPLG AYRQLEQQLK 120 EEKRNKQPQM VPLANAAQLP TTTTSDTNMH LPPLAVDESM VAPRANSANN PMHTYNQQLY 180 NMLNTNVPNY TNPLPQHGYG GETLGTTSTG QNLSDVCTGN NGLGYGRPIQ QAQNAFPSHC 240 SRPIQQVQNA FIPRQVGVHH STTQNVAHNV PLQQQRYPHN HMMDLVQVKR RLEQSDQHMN 300 PSFSGRHIRG RVIGPISTTS SALVGPYGPI SSTSSGTFVN LIAATTGTMV SPSVNVRHVD 360 DRRNQRAAAL PQDFTNYIHT NLPELLYNNI LLLYCLAGGS PSMPNNNNDN NNNNNYLHNA 420 EDELHEAGSN RPACASCKHQ RKKCIEGDCA MWRHFPATKM DEFLAVHKVF GIANVTKKIK 480 SLDNVAQQDE TIKSFLWEAR LWQEDPVHGP LGAYRQLEQQ LKEEKRNKQP QMVPLANAAQ 540 LPTTTTSDTN MHLPPLAVDE SMVAPRANSA NNPMHTYNQQ LYNMLNTNVP NYTNPLPQHG 600 YGGETLGTTS TGQNLSDVCT GNNGLGYGRP IQQAQNAFPS HCSRPIQQVQ NAFIPRQVGV 660 HHSTTQNVAH NVPLQQQRYP HNHMMDLVQV KRRLEQSDQH MNPSFSGRHI RGRVIGPIST 720 TSSALVGPYG PISSTSSGTF VNLIAATTGT MVSPSVNVRH VDDRRNQRAA ALPQDFTNYI 780 HTNLPALSYK SDIPRAIWNL PLTQQGSPQP KCAARVGVSE FDTP

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence

MPNNNNDNNN NNNYLHNAED ELHEAGSNRP ACASCKHQRK KCIEGDCAMW RHFPATKMDE  60
FLAVHKVFGI ANVTKKIKSL DNVAQQDETI KSFLWEARLW QEDPVHGPLG AYRQLEQQLK  120
EEKRNKQPQM VPLANAAQLP TTTTSDTNMH LPPLAVDESM VAPRANSANN PMHTYNQQLY  180
NMLNTNVPNY TNPLPQHGYG GETLGTTSTG QNLSDVCTGN NGLGYGRPIQ QAQNAFPSHC  240
SRPIQQVQNA FIPRQVGVHH STTQNVAHNV PLQQQRYPHN HMMDLVQVKR RLEQSDQHMN  300
PSFSGRHIRG RVIGPISTTS SALVGPYGPI SSTSSGTFVN LIAATTGTMV SPSVNVRHVD  360
DRRNQRAAAL PQDFTNYIHT NLPELLYNNI LLLYCLAGGS PSMPNNNNDN NNNNNYLHNA  420
EDELHEAGSN RPACASCKHQ RKKCIEGDCA MWRHFPATKM DEFLAVHKVF GIANVTKKIK  480
SLDNVAQQDE TIKSFLWEAR LWQEDPVHGP LGAYRQLEQQ LKEEKRNKQP QMVPLANAAQ  540
LPTTTTSDTN MHLPPLAVDE SMVAPRANSA NNPMHTYNQQ LYNMLNTNVP NYTNPLPQHG  600
YGGETLGTTS TGQNLSDVCT GNNGLGYGRP IQQAQNAFPS HCSRPIQQVQ NAFIPRQVGV  660
HHSTTQNVAH NVPLQQQRYP HNHMMDLVQV KRRLEQSDQH MNPSFSGRHI RGRVIGPIST  720
TSSALVGPYG PISSTSSGTF VNLIAATTGT MVSPSVNVRH VDDRRNQRAA ALPQDFTNYI  780
HTNLPALSYK SDIPRAIWNL PLTQQGSPQP KCAARVGVSE FDTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	6e-21	LBD family protein