PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU25347.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 299aa MW: 33645.9 Da PI: 7.3245

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU25347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.5	1.9e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp kfanvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ +l ++k+ PHU25347.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPLKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEYRLRDPVYGCVGLISILQHKLKQVQDDLLTAKK 105 7********************************************************************************************999887 PP DUF260 100 e 100 e PHU25347.1 106 E 106 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPLKFANVH KVFGASNVAK LLNELNATQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HKLKQVQDDL LTAKKELATY IGPQAMLPML 120 QHSGYLQQHP NNPSSSTMMP YNMPPTLGMP TGMQQHGGQL IMRDPQQQQQ QQNHQQVIEA 180 HQLATVMAAT REQQDMMRTY EQQPPPQQQQ FNGGFDSAVR PVTATGFHQM SSSVSPSLGL 240 ASFDNDPYQI HQTQQEHRGQ VQVQPHQLLQ QQQLPQQPQT PQQQQRAKSE EERSIGPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-79	LBD family protein