PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU25198.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SRS

Protein Properties

Length: 377aa MW: 42543.3 Da PI: 7.8191

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU25198.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	138.8	5e-43	159	256	3	102
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql a+++ +++++++++skr+re+ ++s+l s++l+s+++ + PHU25198.1 159 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLMALQQGHNNNNNNNKSKRQRED--PSTSSLVSSRLPSTTTDLARK 255 5789*****************************************************9999999999999999987..778888888998888776655 PP DUF702 102 t 102 + PHU25198.1 256 I 256 4 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MANFFSLGAG SGNQEQQQQQ EISSCHRSNN HNPAVPTEIS QESWFLYRND HNNQEIPTTY 60 KGFELWQSDT TTQHQPEQNQ HQQQHQFRHP IYPLQDFYST AVGLGVGPSR SGFDLSADTL 120 SVKKLLGSVE SVAKGADPTL YAGDHEASRS GFMMMRSGGG GISCQDCGNQ AKKDCQHMRC 180 RTCCKSRGFQ CQTHVKSTWV PAAKRRERQQ QLMALQQGHN NNNNNNKSKR QREDPSTSSL 240 VSSRLPSTTT DLARKIFEAI NLSRSFPKGY FPVVTNLTDS SGPRFASLEE GRQLAYPDAY 300 DAANRIMDLN FYNNFKDRYA DLYKQADFGG PGLDHEDKFL AFMQPLLKLL PKLLTQSKLM 360 DHLPVEVLTK ESWDFEG

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MANFFSLGAG SGNQEQQQQQ EISSCHRSNN HNPAVPTEIS QESWFLYRND HNNQEIPTTY  60
KGFELWQSDT TTQHQPEQNQ HQQQHQFRHP IYPLQDFYST AVGLGVGPSR SGFDLSADTL  120
SVKKLLGSVE SVAKGADPTL YAGDHEASRS GFMMMRSGGG GISCQDCGNQ AKKDCQHMRC  180
RTCCKSRGFQ CQTHVKSTWV PAAKRRERQQ QLMALQQGHN NNNNNNKSKR QREDPSTSSL  240
VSSRLPSTTT DLARKIFEAI NLSRSFPKGY FPVVTNLTDS SGPRFASLEE GRQLAYPDAY  300
DAANRIMDLN FYNNFKDRYA DLYKQADFGG PGLDHEDKFL AFMQPLLKLL PKLLTQSKLM  360
DHLPVEVLTK ESWDFEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	232	KSKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-37	SRS family protein