PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24506.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 540aa MW: 58284.2 Da PI: 8.9964

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24506.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PHU24506.1 97 FVCEICNKGFQRDQNLQLHRRGH 119 89*******************88 PP
2	zf-C2H2	13.3	0.00026	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ PHU24506.1 173 WKCEKCSKRYAVQSDWKAHSKTC 195 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MMMKGLMNQQ VPGVVEENMS NLTSASGEAS VSSSNRNDNN NTTGGIYPPQ YTFAPPIQQA 60 QPAQQQIKKK RNQPGNPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN 120 LPWKLKQRTS KEIRKKVYVC PETSCVHHDP ARALGDLTGI KKHFCRKHGE KKWKCEKCSK 180 RYAVQSDWKA HSKTCGTKEY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITGNPILPT 240 QAGSSTSHMN FQFQPFNAEI PVTFSLKKEQ QTGFNLRPET PSWLLVGGGG GPGPGPGPPP 300 PSPIELSSSI FQSSRFGDQD YAQNHQKQGF MNPNPSLSGP TSGAMASSSP HISATALLQK 360 AAQMGATMSN KASTVSAAAA LGPAMLVRPH QIHVSSSATA TESVNNATDF GLNLSSREDL 420 TSGFFNSLAS YGNKAATATA SAVVAHATMP VSTPTPSSLN DMMNSFSSTT PTGFEGSNFD 480 DPFSSIGILN PKNGNGDGND DMTKDFLGLR PLSHSDIFNI AGLVNTSNEN QSQNHKTWQS

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MMMKGLMNQQ VPGVVEENMS NLTSASGEAS VSSSNRNDNN NTTGGIYPPQ YTFAPPIQQA  60
QPAQQQIKKK RNQPGNPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN  120
LPWKLKQRTS KEIRKKVYVC PETSCVHHDP ARALGDLTGI KKHFCRKHGE KKWKCEKCSK  180
RYAVQSDWKA HSKTCGTKEY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITGNPILPT  240
QAGSSTSHMN FQFQPFNAEI PVTFSLKKEQ QTGFNLRPET PSWLLVGGGG GPGPGPGPPP  300
PSPIELSSSI FQSSRFGDQD YAQNHQKQGF MNPNPSLSGP TSGAMASSSP HISATALLQK  360
AAQMGATMSN KASTVSAAAA LGPAMLVRPH QIHVSSSATA TESVNNATDF GLNLSSREDL  420
TSGFFNSLAS YGNKAATATA SAVVAHATMP VSTPTPSSLN DMMNSFSSTT PTGFEGSNFD  480
DPFSSIGILN PKNGNGDGND DMTKDFLGLR PLSHSDIFNI AGLVNTSNEN QSQNHKTWQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	136	KLKQRTSKEIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-113	C2H2 family protein