PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24473.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 382aa MW: 42169.1 Da PI: 10.2619

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.7	9.3e-16	70	157	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea e+ +l+rg+lk+++W+ev++ + r+ ++ +qCk++++ ++k+yk +k + + s++p+f++l+ PHU24473.1 70 CWSEAATAVLIEAWGERYMELSRGNLKQKHWKEVADIVnsreDYRKTAKTDIQCKNRIDTVKKKYKLEKSKIAAG--QGPSKWPFFEKLD 157 7***********************************854444555566679*************99997..56668****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MDNDEETQSR HSGGSGSPES PRSNGRITVT VASAPPQNTL TLALPIQQSR PGGGVGGGGG 60 GGGGGGREDC WSEAATAVLI EAWGERYMEL SRGNLKQKHW KEVADIVNSR EDYRKTAKTD 120 IQCKNRIDTV KKKYKLEKSK IAAGQGPSKW PFFEKLDQLI GPTAKINSTF AAAGVAGPSN 180 LYAGNQQVPM GIPMGVRSLP QLRPHQQLQQ KQKQKQPGRK RPHMDSETSE SESEPELSPA 240 STDSFPPGTF QTKRSRLQTE SMNRFAKRQE IHTGIGEGSG KGENKNWGNS VRELTRAILK 300 FGEAYEQTES AKVQQMVEME KQRMKFAKEM ELQRMQFFMN TQLELSQLKH KRPGNSNHHS 360 NHHINNHGAA TSNHKNNSDS SI

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MDNDEETQSR HSGGSGSPES PRSNGRITVT VASAPPQNTL TLALPIQQSR PGGGVGGGGG  60
GGGGGGREDC WSEAATAVLI EAWGERYMEL SRGNLKQKHW KEVADIVNSR EDYRKTAKTD  120
IQCKNRIDTV KKKYKLEKSK IAAGQGPSKW PFFEKLDQLI GPTAKINSTF AAAGVAGPSN  180
LYAGNQQVPM GIPMGVRSLP QLRPHQQLQQ KQKQKQPGRK RPHMDSETSE SESEPELSPA  240
STDSFPPGTF QTKRSRLQTE SMNRFAKRQE IHTGIGEGSG KGENKNWGNS VRELTRAILK  300
FGEAYEQTES AKVQQMVEME KQRMKFAKEM ELQRMQFFMN TQLELSQLKH KRPGNSNHHS  360
NHHINNHGAA TSNHKNNSDS SI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	5e-82	Trihelix family protein