PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24078.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 353aa MW: 40380.7 Da PI: 4.7497

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.4	1.9e-25	188	236	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s +++skyF++pi++AAkeL+++lT+LK++CR +GI+RWPhRk+ sl PHU24078.1 188 MLSRDKISKYFYMPITQAAKELNIGLTLLKKRCRDLGIRRWPHRKLMSL 236 58899*****************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MPTSISHQNL VDLLKMPGKL SVFIAXCRTY KPLRAQNKII PGPNMGSDHS NFEVMTNQDI 60 PIQLPPLDDF SEYSGYCAID YQYDLSIQES TANNNIPLME MELEDPFYSS FYSLPTGAGE 120 LCYDESGNGF RMWNEFGLNG ELIGSGSQQL LLCDEMNQQV IMGNDRVEEN IVTEKEKQSD 180 QEISSSRMLS RDKISKYFYM PITQAAKELN IGLTLLKKRC RDLGIRRWPH RKLMSLQTLI 240 KNVKELEKGG GKGMEQKLKD VIKLLEEEKK KMEEVPDMEL EEKTKRLRQA CFKANYKRRR 300 MMCMPELQAS FGSYCTADPN AVNGGDEEED DEEIKSLLAD CFSNNNSPSL HEY

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MPTSISHQNL VDLLKMPGKL SVFIAXCRTY KPLRAQNKII PGPNMGSDHS NFEVMTNQDI  60
PIQLPPLDDF SEYSGYCAID YQYDLSIQES TANNNIPLME MELEDPFYSS FYSLPTGAGE  120
LCYDESGNGF RMWNEFGLNG ELIGSGSQQL LLCDEMNQQV IMGNDRVEEN IVTEKEKQSD  180
QEISSSRMLS RDKISKYFYM PITQAAKELN IGLTLLKKRC RDLGIRRWPH RKLMSLQTLI  240
KNVKELEKGG GKGMEQKLKD VIKLLEEEKK KMEEVPDMEL EEKTKRLRQA CFKANYKRRR  300
MMCMPELQAS FGSYCTADPN AVNGGDEEED DEEIKSLLAD CFSNNNSPSL HEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	8e-36	Nin-like family protein