PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24020.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 485aa MW: 54295.2 Da PI: 8.1639

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	94	113	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ CgksF+++ L H++ PHU24020.1 94 VCKECGKSFPSWKALFGHMK 113 6******************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MGEDQEVVVL KHVCKFCNKS FHCGRSLGGH MRSHMITTTD GETSRKKLPA LIISNVDLDM 60 GTQSANYGLR ENPKKTSKFD QDDALLPNQN NNKVCKECGK SFPSWKALFG HMKCHSSSMN 120 NSVEEDSWNS GKQLVLMDSE SDTEAAAAAP NKKKRSSRKM MKRYMVPTTS SSLTVGANAS 180 PCVSEIEHEQ EEIAMSLIML SRDVGNWVGQ NHVTECSDNN SQFLQSSSRL STKCKDDSGG 240 DLVKLIKKVK NGKTEQGECS KSPTNGQKRD KSQLPTDHKF LGDEIKKKIK VDNEHRVVEI 300 LPKEMDPDPR ENSSKIKFEC TTCNRSFHSY QALGGHRASH KNTKVGNCTS IDIDHHVKQI 360 KNFSNESGIN EFALKIDNNC GSKKQQLKMH ECPICFKIFP SGQALGGHKR SHLIAEAKRN 420 NNNNDQSVEV HKPVPEIRNF LDLNLPAPVE EDTMLDSSST EHIEFKQWWI DSSHKHEQLL 480 GLLSS

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MGEDQEVVVL KHVCKFCNKS FHCGRSLGGH MRSHMITTTD GETSRKKLPA LIISNVDLDM  60
GTQSANYGLR ENPKKTSKFD QDDALLPNQN NNKVCKECGK SFPSWKALFG HMKCHSSSMN  120
NSVEEDSWNS GKQLVLMDSE SDTEAAAAAP NKKKRSSRKM MKRYMVPTTS SSLTVGANAS  180
PCVSEIEHEQ EEIAMSLIML SRDVGNWVGQ NHVTECSDNN SQFLQSSSRL STKCKDDSGG  240
DLVKLIKKVK NGKTEQGECS KSPTNGQKRD KSQLPTDHKF LGDEIKKKIK VDNEHRVVEI  300
LPKEMDPDPR ENSSKIKFEC TTCNRSFHSY QALGGHRASH KNTKVGNCTS IDIDHHVKQI  360
KNFSNESGIN EFALKIDNNC GSKKQQLKMH ECPICFKIFP SGQALGGHKR SHLIAEAKRN  420
NNNNDQSVEV HKPVPEIRNF LDLNLPAPVE EDTMLDSSST EHIEFKQWWI DSSHKHEQLL  480
GLLSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	1e-33	C2H2 family protein