PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU23972.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 658aa MW: 74774.3 Da PI: 5.1008

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU23972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	629	647	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C Cg+ F ++ +L++H+ PHU23972.1 629 SCDTCGEEFDSRNQLHKHL 647 6*****************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence
MFWRGLLESV LNIVQFPLPA KQPLSDRPPF SPLKNPNNAN QTEGKKTNRS FPAAMAAEAA 60 EKRCLYEILG VNRDCTADEI RSAYRKLALQ RHPDKLVRSG VPESEATAAF QELVNAYEVL 120 SDARERAWYD SHRSQILFSN SGPTSSGNSG SVPNLFSFFS NSVYSGYSDK GKGFYKVYGD 180 LFEKIYQNEL NFARKLGTEF PKEAPLMGNL ESPYAQVTAF YSYWLGFVTV MDFCWVDQYD 240 VMAGPNRKSR RVMEDENKKL RKKARREYNE TVRGLAEFVK KRDKRVIDMQ MKRNEEMEKK 300 KEEERKRKKE LEREKAERAK KYVEPEWSKA EELEDDGIEE ESDEDEKKKV DGKELYCVVC 360 SKKFKSEKQW KNHEQSKKHK EKVAALREAF DDEDDEYAEL VEDGASEDID DGVDELAERL 420 ESSTLIQEDE REDDEVQSSE EDETTNYQSG SNLKRAVDEL GLDDDDEASV LEAMISGRKS 480 RKNAGSGGSR QTPTKNVQGE SGNDEMDFME YNNLRSTRRN KGGRKQRNRR PQEEEEEAGG 540 GGNSEQVQLD TEVDDNAYND SSACQGLSSQ TSAERANDHE GDDVSGDGEK VTSKGTEKKT 600 TVKKDKVNKS KDTTKGRKQK AKSKSCSNSC DTCGEEFDSR NQLHKHLGST GHAKLKSR

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence

MFWRGLLESV LNIVQFPLPA KQPLSDRPPF SPLKNPNNAN QTEGKKTNRS FPAAMAAEAA  60
EKRCLYEILG VNRDCTADEI RSAYRKLALQ RHPDKLVRSG VPESEATAAF QELVNAYEVL  120
SDARERAWYD SHRSQILFSN SGPTSSGNSG SVPNLFSFFS NSVYSGYSDK GKGFYKVYGD  180
LFEKIYQNEL NFARKLGTEF PKEAPLMGNL ESPYAQVTAF YSYWLGFVTV MDFCWVDQYD  240
VMAGPNRKSR RVMEDENKKL RKKARREYNE TVRGLAEFVK KRDKRVIDMQ MKRNEEMEKK  300
KEEERKRKKE LEREKAERAK KYVEPEWSKA EELEDDGIEE ESDEDEKKKV DGKELYCVVC  360
SKKFKSEKQW KNHEQSKKHK EKVAALREAF DDEDDEYAEL VEDGASEDID DGVDELAERL  420
ESSTLIQEDE REDDEVQSSE EDETTNYQSG SNLKRAVDEL GLDDDDEASV LEAMISGRKS  480
RKNAGSGGSR QTPTKNVQGE SGNDEMDFME YNNLRSTRRN KGGRKQRNRR PQEEEEEAGG  540
GGNSEQVQLD TEVDDNAYND SSACQGLSSQ TSAERANDHE GDDVSGDGEK VTSKGTEKKT  600
TVKKDKVNKS KDTTKGRKQK AKSKSCSNSC DTCGEEFDSR NQLHKHLGST GHAKLKSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	284	RKSRRVMEDENKKLRKKARREYNETVRGLAEFVKKRDK
2	258	266	KKLRKKARR
3	305	309	RKRKK
4	305	310	RKRKKE
5	518	531	RRNKGGRKQRNRRP
6	519	530	RNKGGRKQRNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-134	C2H2 family protein