PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU23624.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 424aa MW: 46902.8 Da PI: 4.5866

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU23624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	125.3	2.3e-39	234	323	12	101
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 ++++fkn++lPlar+k+++k +edv ++s eaP+l++kace+fi eltlrsw ++eenkrr ++k d+a+a++rt+ fdflvdiv +de+ PHU23624.1 234 ETNNFKNNKLPLARVKRLMKDNEDVCKVSGEAPMLMAKACEMFIQELTLRSWFNTEENKRRMVQKKDVAKAIERTELFDFLVDIVHKDEI 323 689************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MENTSKNSSE NAVAGGGYPM QVPHYHLQQP EEQQSAVNAA GAAAAGYPMQ VPYHHILQRQ 60 QQREQQSAVN AAAAAAAGYP LQVPYYQLQQ QQQQLEQQSV GSVEVAAESG YPLQVPYYQL 120 LQQQQQQEQE QPLAENAAAA AAVAAATGYP LQVPDYQLLQ QQQQEQRLEE NAAAAGYPME 180 VPYYHVLQQQ QEQQLGENAV AAAXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXETNNFKN 240 NKLPLARVKR LMKDNEDVCK VSGEAPMLMA KACEMFIQEL TLRSWFNTEE NKRRMVQKKD 300 VAKAIERTEL FDFLVDIVHK DEIREEGAGF GPSMLGSTSS DVQNAHPPMG QTAPSEVMIR 360 GTASSGIQNF NPPMGQTAPS EVMIRSTAKP RVYPSVYAQP QAWQVAEDKT IASGESSAQG 420 NVDD

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MENTSKNSSE NAVAGGGYPM QVPHYHLQQP EEQQSAVNAA GAAAAGYPMQ VPYHHILQRQ  60
QQREQQSAVN AAAAAAAGYP LQVPYYQLQQ QQQQLEQQSV GSVEVAAESG YPLQVPYYQL  120
LQQQQQQEQE QPLAENAAAA AAVAAATGYP LQVPDYQLLQ QQQQEQRLEE NAAAAGYPME  180
VPYYHVLQQQ QEQQLGENAV AAAXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXETNNFKN  240
NKLPLARVKR LMKDNEDVCK VSGEAPMLMA KACEMFIQEL TLRSWFNTEE NKRRMVQKKD  300
VAKAIERTEL FDFLVDIVHK DEIREEGAGF GPSMLGSTSS DVQNAHPPMG QTAPSEVMIR  360
GTASSGIQNF NPPMGQTAPS EVMIRSTAKP RVYPSVYAQP QAWQVAEDKT IASGESSAQG  420
NVDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	4e-47	NF-YC family protein