PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU23530.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 490aa MW: 53559.3 Da PI: 6.4685

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU23530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70	2.8e-22	134	176	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 e+grC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e PHU23530.1 134 VEQGRCKRTDGKKWRCSRDVAPLQKYCERHMHRGRPRSRKHVE 176 589**************************************98 PP
2	QLQ	49.1	1.7e-17	69	103	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT+aQ+ +L++Q+++yKy+++ vPp+Ll+ i+ PHU23530.1 69 PFTWAQWKELERQAMIYKYMVSAISVPPDLLLSIS 103 9******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MMGHHHQDDG ANKMPCSSEH QNVYYDEASI VLPPVTAGGS AVVRTLQPFD ISTNNSQAAG 60 GMATTLGYPF TWAQWKELER QAMIYKYMVS AISVPPDLLL SISTNSSGAS HGVFHATLAS 120 GSVQGQRYTN VRDVEQGRCK RTDGKKWRCS RDVAPLQKYC ERHMHRGRPR SRKHVEVHAD 180 VSNASDSKKT RRRPTPMVVP AVPTHAAGQI NSHSTKQPLR STYQQIQGPL LFHDETGENI 240 STDPSFNELH RSSGWMMEGD MVAKANAAQQ WQHLMDSSAG FSADGRTHPD LQHGYREEAL 300 DLLASRDLES TEDVSVKQNG EFNFMINPES VSMGQQSLKE APISNLVNSW SNDNIYNNSN 360 DENKEASLWS SLGNISPSSL TLSIAMAAGD ALDEDMGLDS RFMNANQHKS WENSWAPFAP 420 GGPLAEALHP SSSYTSNGDS ISPAATTVSS PSGVLQKTLL SHSDGSVCNS PILAAPTNIT 480 PEMVKFHWPN

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MMGHHHQDDG ANKMPCSSEH QNVYYDEASI VLPPVTAGGS AVVRTLQPFD ISTNNSQAAG  60
GMATTLGYPF TWAQWKELER QAMIYKYMVS AISVPPDLLL SISTNSSGAS HGVFHATLAS  120
GSVQGQRYTN VRDVEQGRCK RTDGKKWRCS RDVAPLQKYC ERHMHRGRPR SRKHVEVHAD  180
VSNASDSKKT RRRPTPMVVP AVPTHAAGQI NSHSTKQPLR STYQQIQGPL LFHDETGENI  240
STDPSFNELH RSSGWMMEGD MVAKANAAQQ WQHLMDSSAG FSADGRTHPD LQHGYREEAL  300
DLLASRDLES TEDVSVKQNG EFNFMINPES VSMGQQSLKE APISNLVNSW SNDNIYNNSN  360
DENKEASLWS SLGNISPSSL TLSIAMAAGD ALDEDMGLDS RFMNANQHKS WENSWAPFAP  420
GGPLAEALHP SSSYTSNGDS ISPAATTVSS PSGVLQKTLL SHSDGSVCNS PILAAPTNIT  480
PEMVKFHWPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	2e-33	GRF family protein