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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU21457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GATA | ||||||||
Protein Properties | Length: 275aa MW: 30257.1 Da PI: 8.6414 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.9 | 1.6e-19 | 193 | 227 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ +Tp+WR gp g+ktLCnaCG++y++ +l PHU21457.1 193 CQHCGADQTPQWRAGPLGPKTLCNACGVRYKSGRL 227 *******************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence |
MDALDPTSAA CFMVDDDLLN FSLEDDEDDE KSTTTSKNNP TSYSSQSSNN PLVDNLLPLN 60 HPECVEEELE WLSNKDAFPA IEFGILSDNP GMVFDHHSPV SVLENSSSTS HSSGNGVASG 120 NAYMSCSANL KVPVNYPVRA RSKRRRRRRR GGFADMPSER CLPVKQASFK NVKKREPLLS 180 LPRKSAANIG RKCQHCGADQ TPQWRAGPLG PKTLCNACGV RYKSGRLLPE YRPANSPTFS 240 PSVHSNSHRK VLEMRKHKIG VGGMLIHEAC GYRVG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 150 | RSKRRRRRRR |
2 | 143 | 148 | KRRRRR |
3 | 143 | 149 | KRRRRRR |
4 | 144 | 150 | KRRRRRR |
5 | 144 | 149 | RRRRRR |
6 | 144 | 150 | RRRRRRR |
7 | 145 | 150 | RRRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-39 | GATA family protein |