PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU21431.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 721aa MW: 81438.5 Da PI: 4.7425

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU21431.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.7	1.1e-18	267	313	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 +isl+dl+++F ++ ++AA +L+v++++LKriCR++GI+RWP+ ik PHU21431.1 267 SISLNDLKQHFGKKREEAAESLDVSVSTLKRICRENGISRWPSKNIK 313 69******************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence
MLLRDEEEVE LSEMEWNDMV NPLISSPAST SWKIQQVWEP DMLYVDYTLL PPSPMEDFAL 60 WNHSWSPPPP PHRQESGMIK GVAKAFDAQL QEDAAGGALL TNDWRFELLP DSRQRIANKI 120 ILTLKRHLPV SGDEGLLELR KIAIRFEEKV YTAATSQIDY LRKISLKMLT METKSQHPVC 180 TETVPVVDES LHVQLDAKSP PEDPTLHYLQ SGEECALPDP QRSVTEHRNL KRKGDAGPSG 240 QNHTICDLGS KQKMDKKMKK TWGIGGSISL NDLKQHFGKK REEAAESLDV SVSTLKRICR 300 ENGISRWPSK NIKRERLLLS NLSTNETVSE AGGGRISIST TPTAFASTEV LAKSNQQNNL 360 SLDNEIGTSV NHGVLRNDEG NGETRMIQEG YSADQEVLYK PQEFEPGPDS FNPAYSSSDA 420 PTILYPLPQE RMPAEDSPDQ QGEEIARQIE ITDGTSHLEK QCLGRERLGC NTEKEVIVRV 480 EDSSSYDFGS VLELIQDHHA DFASFHLVDK DPLISTDDLE SNCIKSQSTL VSESEPSLIN 540 DARRMKLVFE KLITLPLEDL TNTNQEASMT EALTILSGNL SLFTDEQAKQ LLEFKFDFPT 600 IMYSWRDCSQ TRIDCRNFLA EFERTNSLLE TSTKEEVDLK DRYTQIECKE KEMLAQLEAI 660 QKEKNELTKR RSENFIQNKH LAALAEEQAG RTKEKELQMS IASAKLDKLK SQWASVQSSF 720 N

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence

MLLRDEEEVE LSEMEWNDMV NPLISSPAST SWKIQQVWEP DMLYVDYTLL PPSPMEDFAL  60
WNHSWSPPPP PHRQESGMIK GVAKAFDAQL QEDAAGGALL TNDWRFELLP DSRQRIANKI  120
ILTLKRHLPV SGDEGLLELR KIAIRFEEKV YTAATSQIDY LRKISLKMLT METKSQHPVC  180
TETVPVVDES LHVQLDAKSP PEDPTLHYLQ SGEECALPDP QRSVTEHRNL KRKGDAGPSG  240
QNHTICDLGS KQKMDKKMKK TWGIGGSISL NDLKQHFGKK REEAAESLDV SVSTLKRICR  300
ENGISRWPSK NIKRERLLLS NLSTNETVSE AGGGRISIST TPTAFASTEV LAKSNQQNNL  360
SLDNEIGTSV NHGVLRNDEG NGETRMIQEG YSADQEVLYK PQEFEPGPDS FNPAYSSSDA  420
PTILYPLPQE RMPAEDSPDQ QGEEIARQIE ITDGTSHLEK QCLGRERLGC NTEKEVIVRV  480
EDSSSYDFGS VLELIQDHHA DFASFHLVDK DPLISTDDLE SNCIKSQSTL VSESEPSLIN  540
DARRMKLVFE KLITLPLEDL TNTNQEASMT EALTILSGNL SLFTDEQAKQ LLEFKFDFPT  600
IMYSWRDCSQ TRIDCRNFLA EFERTNSLLE TSTKEEVDLK DRYTQIECKE KEMLAQLEAI  660
QKEKNELTKR RSENFIQNKH LAALAEEQAG RTKEKELQMS IASAKLDKLK SQWASVQSSF  720
N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15790.1	2e-20	bHLH family protein