PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU20615.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 330aa MW: 37347.2 Da PI: 8.3423

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU20615.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	3e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl PHU20615.1 14 RGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	36	1.6e-11	70	111	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PHU20615.1 70 GFSDEEDRIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 699***************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MGRAPCCDKN NVKRGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSDEEDRIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK 120 QRQKQGSRKG KEIKSMSSIS TSNNLNQNPC WPELQPLPYS NNEPRFINND HTSIRKLLIK 180 LGGKFSENDQ LTNVVPNSHE YPIDNSSSMQ LMYQDHINLI SSAPIDHNVF NITAPNIDLY 240 NMDGAASNFT AEFEHMINTS QQKIDGLEFL YENLVIDKFT STSGGNLDWE SMNPYVLPLP 300 PIVASSDGGF QQGVIFQQGA LDELRYPMVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	1e-78	MYB family protein