PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU20082.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 493aa MW: 55499.9 Da PI: 6.0365

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU20082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	51.2	2.5e-16	331	378	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e l+++F + +dAAk+L v++ + KriCR+y+I+RWPh k +++ PHU20082.1 331 ITREILEEHFGMCPQDAAKSLRVSVPTFKRICREYNISRWPHHKTRKV 378 89999***************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MDGEFLQEVG AFQKASDEVC LDTLIPTDVN NDEVGLLGPL GRVFKSGLPE INFGICSYAV 60 IQFPMLKNAI RLGIRQYFAI PVLKLHDKHC VGVLEFASAE QYVSYFIPGL IELYDNAGLG 120 QMETALDVIC TIHSLLFAQI WILDPNHATS INALISAGTK SYDSSSTVYS SFSYIQTGKG 180 VVGRAFSSQG SCFCKDVTLL SLTEYPLVPT ARKARLTQCF AICLKNTRAD KGRRVDVDEA 240 HDHIEIEKDA SEIMQLESHF EQENVETDYT CSARSNDKVE HSDIARCGRQ SVEAESINGE 300 SNWVSRETTN IQRIDSQKNS SKQRILKDYG ITREILEEHF GMCPQDAAKS LRVSVPTFKR 360 ICREYNISRW PHHKTRKVYP HVSQGVSLHG VEPYEGDQQC PNLSQEKGTD RSCGSLMTIK 420 VTYRDDIFKF KLTPSSSKVK LEGIVEKQLN ISLQKFSMKY QDKDDDWVTI TEDADLREGM 480 HELRLLGGLL RNY

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MDGEFLQEVG AFQKASDEVC LDTLIPTDVN NDEVGLLGPL GRVFKSGLPE INFGICSYAV  60
IQFPMLKNAI RLGIRQYFAI PVLKLHDKHC VGVLEFASAE QYVSYFIPGL IELYDNAGLG  120
QMETALDVIC TIHSLLFAQI WILDPNHATS INALISAGTK SYDSSSTVYS SFSYIQTGKG  180
VVGRAFSSQG SCFCKDVTLL SLTEYPLVPT ARKARLTQCF AICLKNTRAD KGRRVDVDEA  240
HDHIEIEKDA SEIMQLESHF EQENVETDYT CSARSNDKVE HSDIARCGRQ SVEAESINGE  300
SNWVSRETTN IQRIDSQKNS SKQRILKDYG ITREILEEHF GMCPQDAAKS LRVSVPTFKR  360
ICREYNISRW PHHKTRKVYP HVSQGVSLHG VEPYEGDQQC PNLSQEKGTD RSCGSLMTIK  420
VTYRDDIFKF KLTPSSSKVK LEGIVEKQLN ISLQKFSMKY QDKDDDWVTI TEDADLREGM  480
HELRLLGGLL RNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-30	Nin-like family protein