PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU19804.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 475aa    MW: 54527.3 Da    PI: 6.7024
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU19804.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.11.4e-85874641367
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++ Ll  A+ +++++  la   L +l +++s +gd++qR+aayf+ +L arl+   s  y+ +   +t+    +ee+ a++ f++vsP+++f+h+taN
  PHU19804.1  87 LIHSLLISATSINENSIDLAVDNLHELYQNVSLKGDSVQRVAAYFADGLIARLLTRKSPFYDMIMKPPTQ----EEEFLAFTEFYKVSPFYQFAHFTAN 181
                 57899999***********************************************999999988766665....68889999***************** PP

        GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledle 190
                 qaIle++e+e       +H+iDfdis+G+QWp+L+q+L++ +  ++  slRiTg g+      +el+et+ rL +fA+ + +++fef+ +    l+  +
  PHU19804.1 182 QAILESFEKEleynnGLLHVIDFDISYGFQWPSLIQSLSENAttSNRISLRITGYGK----TIDELRETETRLVSFAKCFrNLSFEFQGV----LSRYK 272
                 *********998887889*********************988656677*********....99***************9758*******7....88999 PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                 l++L  +++E+laVnl+++l +l      + s+++e+Lk v +l P +v++veqe     ++F+ rf+e+l+y++a+fdsl+  lp +s +r ++E+  
  PHU19804.1 273 LSNLTKRKNETLAVNLIFHLNSLS-----TYSKISETLKEVHDLCPSIVTIVEQEGCKIPQTFMPRFMESLHYFAAMFDSLDDCLPIDSIKRLSIEKNH 366
                 9*****************999997.....4444669*******************9999**************************************** PP

        GRAS 290 lgreivnvvacegae.......rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.............eesgslvlgWkdrpL 367
                 lg+ei+n++   ++e       +  r e++e+W+ r+e+ GF  +pls k+ +qaklll+  +    +++             e+  ++ l W+dr++
  PHU19804.1 367 LGKEIKNMLNYDHKEgannniySSSRYEQMETWKGRMESHGFLGIPLSCKNIMQAKLLLKIRSHSNSTIQldggnggfrvleiEDPRAISLAWQDRAV 464
                 *********7655442223333678**********************************988866577774455555444454445666699999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    
MGDIVDHEEE FLSLRLAILN NSSCCDQRNI NKIKKRKRRE LEFINTWDLN ESCEGKIFSL  60
LELRESMLKI DVKKKGGVVE DGKGLHLIHS LLISATSINE NSIDLAVDNL HELYQNVSLK  120
GDSVQRVAAY FADGLIARLL TRKSPFYDMI MKPPTQEEEF LAFTEFYKVS PFYQFAHFTA  180
NQAILESFEK ELEYNNGLLH VIDFDISYGF QWPSLIQSLS ENATTSNRIS LRITGYGKTI  240
DELRETETRL VSFAKCFRNL SFEFQGVLSR YKLSNLTKRK NETLAVNLIF HLNSLSTYSK  300
ISETLKEVHD LCPSIVTIVE QEGCKIPQTF MPRFMESLHY FAAMFDSLDD CLPIDSIKRL  360
SIEKNHLGKE IKNMLNYDHK EGANNNIYSS SRYEQMETWK GRMESHGFLG IPLSCKNIMQ  420
AKLLLKIRSH SNSTIQLDGG NGGFRVLEIE DPRAISLAWQ DRAVQNLVQT VNPNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439KKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.12e-50GRAS family protein