PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU19771.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 232aa MW: 25374.3 Da PI: 4.3795

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU19771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94	1.7e-29	16	102	4	89
DUF260 4 aCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 a k+lrrkC+ d ++apyf +e+ p+kf ++hk+FGasnv+kll+++p ++r da+ ++ yeA+ar++dPvyG+v+ i++l+qql+ PHU19771.1 16 ASKFLRRKCVVDYIFAPYFYSEEgPSKFDAIHKVFGASNVSKLLHNVPVDDRCDAVVTISYEAKARIKDPVYGCVANIFALEQQLRM 102 789**************888879*********************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MASSSSTGGA GSPYGASKFL RRKCVVDYIF APYFYSEEGP SKFDAIHKVF GASNVSKLLH 60 NVPVDDRCDA VVTISYEAKA RIKDPVYGCV ANIFALEQQL RMRCKLNVVS VIGNTDKSIG 120 IESGDDTLED AYFDWNNNFI QQQSEDIEGC SKDIVTADLD ALVESVVNQK SNNPNIGTSS 180 TVHIHKYHKN DYSSTIPEFA QGELDSILEG LAAPVDDLPL EVIPPSEEIV NQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	2e-42	LBD family protein