PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU18661.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 504aa MW: 56581.1 Da PI: 7.5159

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU18661.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.9	6.7e-31	85	142	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgy+WrKYGqK+vkgs+fprsYY+Ct+++Cpv+kkve++ +++v+ei+Y+g Hnh+k PHU18661.1 85 DDGYTWRKYGQKHVKGSNFPRSYYKCTQQTCPVRKKVECAP-NGQVIEIVYNGAHNHPK 142 8**************************************.*************85 PP
2	WRKY	105.8	2.3e-33	292	349	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver+++d k v++tYeg+Hnhe PHU18661.1 292 EDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASDDLKSVITTYEGKHNHE 349 8********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MSSLPPCRTD FLTIPPGISP AALLDSTFVL PSSMTPTDNV AQILHCIEST NNQIPQQQQE 60 LTKKQNQFEQ RGVFSSSISP NNSSDDGYTW RKYGQKHVKG SNFPRSYYKC TQQTCPVRKK 120 VECAPNGQVI EIVYNGAHNH PKTQHLRRKA MDADSYVVGQ ENGSSLIWRN DQQLEYNKDV 180 NSCCNGLERK PSASVLSDVS SDPMLSNNLK SMNVFESDAT HELSSTLNSF DDEDEDLATQ 240 EGNFLGDGIN EFEFEPKRRK KESYSVEPSL LSRTVREPKV VLQVESEADI LEDGYRWRKY 300 GQKVVKGNPN PRSYYKCTSA GCLVRKHVER ASDDLKSVIT TYEGKHNHEV PSANKTNGVA 360 GHFRSASMLN NGQQQPACTA SRKSLKDSNI RVQFQDLPIP FERKFFMGSE YLRPNFGASY 420 LSDLSFGGGS LQLPDFAIPL PLPSRMSFPA RQNEPRLGDF QMNNHLLLPN GASTFLAAGN 480 TRHINDDNNN SRLLKAKDEV QYWT

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MSSLPPCRTD FLTIPPGISP AALLDSTFVL PSSMTPTDNV AQILHCIEST NNQIPQQQQE  60
LTKKQNQFEQ RGVFSSSISP NNSSDDGYTW RKYGQKHVKG SNFPRSYYKC TQQTCPVRKK  120
VECAPNGQVI EIVYNGAHNH PKTQHLRRKA MDADSYVVGQ ENGSSLIWRN DQQLEYNKDV  180
NSCCNGLERK PSASVLSDVS SDPMLSNNLK SMNVFESDAT HELSSTLNSF DDEDEDLATQ  240
EGNFLGDGIN EFEFEPKRRK KESYSVEPSL LSRTVREPKV VLQVESEADI LEDGYRWRKY  300
GQKVVKGNPN PRSYYKCTSA GCLVRKHVER ASDDLKSVIT TYEGKHNHEV PSANKTNGVA  360
GHFRSASMLN NGQQQPACTA SRKSLKDSNI RVQFQDLPIP FERKFFMGSE YLRPNFGASY  420
LSDLSFGGGS LQLPDFAIPL PLPSRMSFPA RQNEPRLGDF QMNNHLLLPN GASTFLAAGN  480
TRHINDDNNN SRLLKAKDEV QYWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	262	PKRRKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-67	WRKY family protein